Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq141 140 4e-28 >seq141 Length=34748 Score = 140 bits (154), Expect = 4e-28 Identities = 442/681 (65%), Gaps = 8/681 (1%) Strand=Plus/Minus Query 53996 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 54055 || ||||| | ||||| || |||| | || || || ||||| |||||||| |||| | Sbjct 30241 GGGCACATGAGGGACCAGTCACCGTTCTGCTCGACACGCTTCATGAAGAGATCGGGAACC 30182 Query 54056 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 54115 || || || || || || | | | | ||||| || || ||||| || Sbjct 30181 CAGAGGGCGTAGAAGAGCTCACGAGCACGAACCTCCTCCTTACCGTGGTTCTTGCGGAGG 30122 Query 54116 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGC 54175 ||||||||| | | | || || ||||| || || | ||| |||| | | || || Sbjct 30121 TCGAGGAACTCAAAGACGTCCGAGTGCCATGGCTCAATGTAGATGGCAAAGGCACCGGGA 30062 Query 54176 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 54235 || ||||| || ||||| || | ||| | |||||||| || | || | | ||| ||| Sbjct 30061 CGCTTGTTGCCACCCTGGTCGACGTAGCGGGCGGTGTTGTTGAAGACGCGGAGCATGGGA 30002 Query 54236 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTA 54295 | ||||| ||| |||| ||||| |||| || ||| ||| || |||| || | Sbjct 30001 ACGATACCGTTGCTAACACCGTTGGTGCCGGCAATGTAGGAGCCAGTGCCACGGATGC-A 29943 Query 54296 CTAATTGAT-AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 54354 | || | ||||| || || || || | || ||||| | ||||| || | ||| Sbjct 29942 GTGGATGTTGAGACCGATACCACCGGCGGTCTTGGAGATCATGGCGCAGGTCTTGAGCGT 29883 Query 54355 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG 54414 || |||||||| || || || ||| ||||| | | || ||||| || | || Sbjct 29882 GTCGTAGATGCCGTCGATGGAGTCGTCCTTCATGGTGACGAGGAAACACGACGAGAGCTG 29823 Query 54415 GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 54474 | || || || || || || | ||| || || ||||| ||||| | |||| || Sbjct 29822 CGGGTGAGGGGTACCGGCGTTGAAGAGGGTGGGCGAGGCGTGGGTAAAGTACTTTTGCGA 29763 Query 54475 AAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGA---TGAATTCCTACTGC 54531 | || ||||| |||||||| || | | || ||| ||| || || || || || Sbjct 29762 CATGAGGTTGTAGGTCTCGATGGCGCTGGCGATGTCC---TGACCGTGGATACCGACGGC 29706 Query 54532 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTA 54591 ||||||||| | ||||||||| || | || ||| |||| ||| || || | ||| Sbjct 29705 GACACGCATGAGCATGTGCTGGGGACGCTCTGCGACCTTGCCGTTGATGCGGAGGAGGTA 29646 Query 54592 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||| || | || || || || || ||||||| ||||| || ||||| || || Sbjct 29645 GGAGCGCTCGAGGGTCTTGAAGCCGAAGAAGTTGTAGTGGAAGTCACGCTCGTAGATGAT 29586 Query 54652 AACTGAGTTGAGTTTATCCTT 54672 | |||| ||| | ||||| Sbjct 29585 GGCCGAGTCGAGCTGGTCCTT 29565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593607219533760