Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq18 116 3e-21 seq27 96.9 3e-15 >seq18 Length=238221 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||| | || | ||| |||||||| || ||||| ||||||| Sbjct 147291 CCACCACGCAGGCGGAGCACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 147232 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||| ||||| ||||| ||| | ||||||| ||||||||| || Sbjct 147231 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCAGGTGGG 147172 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| ||||| || ||||| || || | | ||| || || | |||| Sbjct 147171 ATGCCCTCCTTATCTTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACC 147112 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||||||||| | || ||||| || || ||||| Sbjct 147111 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 147065 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||| || | ||| | || || ||||| || ||||| ||||| | Sbjct 147519 CCACCACGCAGACGGAGGACGAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCAGAG 147460 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || ||||||| ||||| ||||| ||| | || || | |||||| || || Sbjct 147459 AGTGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCGGGTGGG 147400 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | | ||| || || || ||| Sbjct 147399 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACC 147340 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || ||||||||||| || || ||||| || || ||||| Sbjct 147339 TCGAGGGTGATCGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 147293 >seq27 Length=198227 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 20978 AGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCC 21037 |||||| ||||| |||||||| ||||| | ||||| || | ||||| || || || || Sbjct 160374 AGTGGATTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGTTGCTTTCC 160315 Query 21038 CGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTT 21097 || |||| || | |||||||| ||| | ||| |||||||| |||||| || Sbjct 160314 TGCGAAAATGAGACGTTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTT 160255 Query 21098 CACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGT 21157 || | | ||| || || || || ||| | || |||||||||||||| || || Sbjct 160254 GACGTTGTCGATGGTGTCCGAGGATTCAACTTCGAGAGTGATGGTCTTGCCGGTCAAGGT 160195 Query 21158 TTTGACAAATATTTGCAT 21175 |||||||| || ||||| Sbjct 160194 CTTGACAAAGATCTGCAT 160177 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | ||||||||||| || ||||| ||||||| Sbjct 160175 CCACCACGGAGACGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 160116 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| | | || |||| |||||| || ||| | || || | ||||||||| || Sbjct 160115 AGGGTTCGTCCATCTTCCAACTGTTTACCGGCAAAGATGAGACGCTGCTGGTCGGGCGGG 160056 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||||| || || | | | | || || || ||| Sbjct 160055 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACC 159996 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||||||||| | || ||||| || || ||||| Sbjct 159995 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 159949 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 ||||| ||| |||||| |||||||| ||||| | || || || | ||||| ||||| Sbjct 160607 TGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGGCCATCCTCGAGCTGC 160548 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 || || ||| | || |||| ||||||||| || | ||||||||||| ||| || Sbjct 160547 TTACCGGCAAAGATGAGTCGCTGCTGGTCAGGTGGGATACCTTCCTTGTCCTGGATTTTC 160488 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 || || | | ||| || || || ||| || | || || ||||| ||||| Sbjct 160487 GCCTTTACGTTGTCGATCGTGTCCGAGGACTCAACCTCGAGAGTGATCGTCTTTCCGGTC 160428 Query 21153 AACGTTTTGACAAATATTTGCAT 21175 | || |||||||| || ||||| Sbjct 160427 AGAGTCTTGACAAAGATCTGCAT 160405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422179885470992