Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq75 423 2e-113 seq27 154 2e-32 seq18 138 1e-27 seq25 120 3e-22 seq3372 107 2e-18 >seq75 Length=98333 Score = 423 bits (468), Expect = 2e-113 Identities = 549/742 (74%), Gaps = 25/742 (3%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||||| |||||| | ||||| Sbjct 63971 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAAATCGACCTC 64030 Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||||||||| | | |||||||||||||| || |||||| Sbjct 64031 TCCAAGGATCTCCA-CGACTGGGACAACAAGCTCAACGACAACGAGCGTCACTTCATCTC 64089 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||||| || ||||| ||||||||| |||||| |||||||||||||| || |||||||| Sbjct 64090 CCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGTATCGTCAACGAGAACCTTGTCGAGCG 64149 Query 116812 TTTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870 |||| |||| | || | |||| |||||||| || ||||||||||| || |||||| | Sbjct 64150 TTTCAGCTCTGAAGTT-CAGGCCGCCGAGGCCCGTTGCTTCTACGGTTTCCAGATCATGA 64208 Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGG 116930 |||||||| | |||||||| | || ||| |||||||||||| ||| | || | | Sbjct 64209 TGGAGAACATCCACTCGGAGACCTACTCGCTCCTCATCGACACCTACATCCGTGAGCCCG 64268 Query 116931 AGGAGA---AGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 || || || ||| || ||| |||| ||||||| || || |||||| |||||| Sbjct 64269 AGCAGCGCGAGTTCCTCTT--TGA-CGCCGTCGAGACCATCCCCGTCGTCAAGCAGAAGG 64325 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAG-GCCGCCTTCGGCGAGCGCCTGGTG 117046 | || ||||| || || |||||| || || || | ||| | |||| |||||| || || Sbjct 64326 CTGACTGGGCTCTCCGATGGATCAGCGACA-AGCGCGCCTCTTTCGCCGAGCGTCTCGTT 64384 Query 117047 GCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC 117106 |||||||| || |||||||| ||||||| || || |||||| |||| || |||||| Sbjct 64385 GCCTTCGCCGCTGTCGAGGGTATCTTCTTCTCCGGTTCCTTCGCCTCCATCTTCTGGCTC 64444 Query 117107 AAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAG 117166 ||||| || || ||||||||||| || |||||| ||||||||||||||| | ||||| Sbjct 64445 AAGAAGCGTGGTCTCATGCCCGGTCTCACTTTCTCCAACGAGCTCATCTCGCGTGACGAA 64504 Query 117167 GGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCG 117226 |||||||| |||||||||||| | || |||| || | | ||||| || | || Sbjct 64505 GGTCTGCACACCGACTTTGCCTGCCTCCTCTTCAGCCACCTCAAGAAGCGAGCGCACCCG 64564 Query 117227 G----CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCAC 117282 | || || ||| | ||| ||||||| || || | |||||| | |||||||| Sbjct 64565 GACACCGTGC-TCA---AAATCATCACCGAGGCCGTGGAAATCGAGAAAGCTTTCCTCAC 64620 Query 117283 CGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAA-CGATGTCGCAATACATCG 117341 ||| || || || || | || | || | || | ||||| ||||| || ||||| | Sbjct 64621 CGACGCTCTCCCCGTATCTTTGATTGGCATGAACT-CGAAATTGATGTGCCAGTACATAG 64679 Query 117342 AGTTCGTCGCCGACAGGCTGCT 117363 ||| ||| || ||| | ||||| Sbjct 64680 AGTACGTGGCTGACCGTCTGCT 64701 >seq27 Length=198227 Score = 154 bits (170), Expect = 2e-32 Identities = 158/204 (77%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| ||||| || || Sbjct 159949 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCC 160008 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || |||| ||||| ||||||||||| | ||||| Sbjct 160009 GACACCATTGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCA 160067 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || || |||||| |||| || | || ||||| |||||||| Sbjct 160068 GCAGCGTCTCATCTTTGCCGGTAAACAGTTGGAAGATGGACGAACCCTTTCGGACTACAA 160127 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| |||| || || Sbjct 160128 CATCCAGAAGGAGTCCACCCTCCA 160151 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| |||||||| |||| || ||| || | Sbjct 160177 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACTCTCGAAGTTGAATCCTCG 160236 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| |||||||| ||| | ||||| Sbjct 160237 GACACCATCGACAACG-TCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCA 160295 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||| | ||| || || || || || || | |||||||| ||||||||| Sbjct 160296 GCAACGTCTCATTTTCGCAGGAAAGCAACTCGAGGATGGCCGCACCCTTTCCGACTACAA 160355 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| |||||||| |||| || || || || ||||| Sbjct 160356 CATTCAGAAGGAATCCACTCTCCACCTTGTCTTGCG 160391 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || || ||||| |||| || || || | Sbjct 160405 ATGCAGATCTTTGTCAAGACTCTGACCGGAAAGACGATCACTCTCGAGGTTGAGTCCTCG 160464 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| ||||| | ||||| || || ||||| | ||||| Sbjct 160465 GACACGATCGACAACG-TAAAGGCGAAAATCCAGGACAAGGAAGGTATCCCACCTGACCA 160523 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||||||||| || || || ||||| || || | || || || ||||||||| Sbjct 160524 GCAGCGACTCATCTTTGCCGGTAAGCAGCTCGAGGATGGCCGTACTCTTTCCGACTACAA 160583 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| ||||||||| ||| |||| || |||||||| Sbjct 160584 CATTCAGAAGGAGAGCACCTTGCACCTCGTGTTGCG 160619 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || ||||||||||| || |||||||| | || ||||| | | Sbjct 160633 ATGCAAATCTTTGTCAAGACGCTCACGGGAAAGACCATCACTTTGGAGGTCGAGTCGTCG 160692 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||||| || || | ||||| ||||| ||||| | |||||| Sbjct 160693 GATACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAG 160752 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| || || || ||| |||| |||| || ||||| ||||||||| Sbjct 160753 CAGCGTTTGATCTTTGCTGGTAAGCAGTTGGAGGACGGTCGTACCCTGTCGGACTACAAC 160812 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || ||||||||| ||| |||| || || | || || | ||||| Sbjct 160813 ATTCAGAAGGAGAGCACTTTGCACCTTGTCCTCCGTCTGCGTGGCGG 160859 >seq18 Length=238221 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| | || || || | | Sbjct 147065 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTCG 147124 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || |||| || || ||||||||||| | ||||| Sbjct 147125 GACACCATCGACAACG-TCAAGGCCAAGATTCAAGATAAGGAGGGCATCCCACCTGACCA 147183 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||| |||| || ||||| ||||| || |||| || ||||| |||||||| Sbjct 147184 GCAGCGACTTATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTTTCGGACTACAA 147243 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | || || || || ||| | ||| || | || || Sbjct 147244 CATCCAGAAGGAGTCGACTCTTCACCTCGTGCTCCGCCTGCGTGGTGG 147291 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || |||||||| || ||||||||| |||| || || | Sbjct 226600 AAGATGCAGATCTTTGTTAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTGGAGTCT 226541 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | |||| |||||| || || | ||||| ||||| || ||| | || Sbjct 226540 TCGGACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGA 226482 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| ||||| |||| ||| || || ||||| || |||| || ||||| ||||| Sbjct 226481 CCAGCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGTACCCTTTCGGACTA 226422 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| | || || || || ||| | ||| || | || || Sbjct 226421 CAACATCCAGAAGGAGTCGACCCTTCACCTCGTGCTCCGCCTGCGTGGTGG 226371 Score = 129 bits (142), Expect = 6e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| || |||||| |||| ||||| || | Sbjct 147293 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACGATCACCCTCGAGGTCGAGTCCTCG 147352 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| || |||||||| | || || Sbjct 147353 GACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCACCCGATCA 147411 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || ||||| ||||| || |||| || || ||| |||||||| Sbjct 147412 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACACTCTCTGACTACAA 147471 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | ||||| ||||| || Sbjct 147472 CATCCAGAAGGAATCGACGCTTCATCTCGT 147501 >seq25 Length=198755 Score = 120 bits (132), Expect = 3e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || || || ||||||||| |||| ||||| | | |||| | | | | |||||| Sbjct 152117 ACAGGTAAGACCATCACCCTCGAGGTCGAGTCTTCGGACACCATCGACAATGTCAAGGCT 152176 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || || | ||||| |||||||||||| | |||||||| || || |||| ||| || || Sbjct 152177 AAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGTAAG 152236 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || |||| |||||||| |||||||||||||||||||||| | || |||| Sbjct 152237 CAGCTCGAGGACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACCTTGCA 152295 >seq3372 Length=309 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||| || ||| | |||||||| || ||||||| ||| || || ||||| || Sbjct 305 GACAAGGAGGGTATTCCCCCTGACCAGCAGCGTCTCATCTTCGCTGGTAAGCAGCTTGAA 246 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| ||||| ||| ||||||||||||||||||||| | || || || || |||||| Sbjct 245 GACGGCCGCACGCTCTCGGACTACAACATCCAGAAGGAGTCGACACTTCACCTTGTGTTG 186 Query 40903 CG 40904 || Sbjct 185 CG 184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515119943021120