Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq27 131 2e-25 seq18 116 4e-21 seq3372 95.1 1e-14 seq25 93.3 5e-14 >seq27 Length=198227 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||||||| | ||||| ||||||||||| ||||| ||||| || | ||||| || | Sbjct 160619 CGCAACACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGGCCA 160560 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || ||||||||||| || || ||||||||||||||||| | || | | |||||| Sbjct 160559 TCCTCGAGCTGCTTACCGGCAAAGATGAGTCGCTGCTGGTCAGGTGGGATACCTTCCTTG 160500 Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| |||||| || | ||| | | | |||||| || || || |||| ||||| Sbjct 160499 TCCTGGATTTTCGCCTTTA-CGTTGTCGATCGTGTCCGAGGACTCAACCTCGAGAGTGAT 160441 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || || ||||| |||||||| ||||| Sbjct 160440 CGTCTTTCCGGTCAGAGTCTTGACAAAGATCTGCAT 160405 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 ||||| ||||||||||| ||||| ||||| || | ||| || || |||| || | |||| Sbjct 160835 TGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCCGACAGGGTACGACCGTCCTCCAACTGC 160776 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 |||||||| || || | ||||||||||||| || | | |||||||||| ||| || Sbjct 160775 TTACCAGCAAAGATCAAACGCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGGATCTTG 160716 Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160 |||| | | | || || ||| || || || | |||||||| || ||||| Sbjct 160715 GCCTTGACATTGTCAATGGTATCCGACGACTCGACCTCCAAAGTGATGGTCTTTCCCGTG 160656 Query 43161 AGCGTCTTTACAAAGATTTGCAT 43183 |||||||| |||||||||||||| Sbjct 160655 AGCGTCTTGACAAAGATTTGCAT 160633 Score = 109 bits (120), Expect = 6e-19 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||| |||||| || || ||||| || | || || || | || || Sbjct 160157 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTTCGTCCATCTTCC 160098 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 | ||| ||||| || || ||||| ||||||||||||| ||| | || |||||||||| || Sbjct 160097 AACTGTTTACCGGCAAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC-TG 160039 Query 43095 ATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 | | || | |||| ||| | | | |||||| || || || |||| |||||||| | Sbjct 160038 AATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCT 159980 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || || ||||| || ||||| ||||| Sbjct 159979 TGCCGGTGAGGGTCTTGACGAAGATCTGCAT 159949 >seq18 Length=238221 Score = 116 bits (128), Expect = 4e-21 Identities = 145/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || ||||||||||| ||||| Sbjct 226406 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTACCGGCGAA 226465 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || |||||||||||||| | || | | |||||||||| ||| || |||| ||| Sbjct 226466 GATAAGTCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 226524 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| || ||||| |||| |||||||| || ||||| || ||||| | Sbjct 226525 TGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTAA 226584 Query 43171 CAAAGATTTGCATTTT 43186 ||||||| ||||| || Sbjct 226585 CAAAGATCTGCATCTT 226600 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || |||||||| || || || Sbjct 147256 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAA 147197 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || |||||||||||||| | || | || |||||| | | ||| | || | |||| || Sbjct 147196 GATAAGTCGCTGCTGGTCAGGTGGGATGCCCTCCTTAT-CTTGAATCTTGGCCTTGA-CG 147139 Query 43111 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | | | ||||| || ||||| || | |||||||| ||||| || || ||||| Sbjct 147138 TTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTG 147079 Query 43170 ACAAAGATTTGCAT 43183 || ||||| ||||| Sbjct 147078 ACGAAGATCTGCAT 147065 >seq3372 Length=309 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 43027 CGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCT 43086 |||| || |||||||||||||| || ||||| ||||||||||| | || | | ||||| Sbjct 14 CGTCTTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGGGGGATACCCTCCT 73 Query 43087 TGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 ||||| ||| || |||| | | | |||||| || ||||| || | |||| Sbjct 74 TGTCCTGGATCTTGGCCTTGACATTGTCGATTGTGTCGGAAGACTCCACCTCAAGGGTGA 133 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || ||||| || || ||||| |||||||| ||||| Sbjct 134 TCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 170 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||||||| | || | ||| |||||| || || ||||| || | || || || || Sbjct 184 CGCAACACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCG 243 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || ||||||||||||||||| ||||| ||||||||||| | || | | ||||||| Sbjct 244 TCTTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGGGGAATACCCTCCTTG 303 Query 43089 TCC 43091 ||| Sbjct 304 TCC 306 >seq25 Length=198755 Score = 93.3 bits (102), Expect = 5e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| ||||| || |||||| || || ||||| || | || || || |||| || Sbjct 152301 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCG 152242 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 ||||||||||| ||||| || || ||||||||||||| || | || |||||||||| | Sbjct 152241 AGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 152182 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || || |||| | | | ||||| || || || |||| |||||||| || Sbjct 152181 ATCTTAGCCTTGACATTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTA 152122 Query 43155 CCCGTT 43160 || ||| Sbjct 152121 CCTGTT 152116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571707439339360