Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq27 143 2e-29 seq18 114 8e-21 seq3372 93.3 3e-14 seq25 91.5 1e-13 >seq27 Length=198227 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | || || ||||| ||||| || || ||||| ||||||||||| ||| Sbjct 160859 CCGCCACGCAGACGGAGGACAAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCCGAC 160800 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| ||||||||||| || || || || | |||||||||||| || Sbjct 160799 AGGGTACGACCGTCCTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCGGGTGGG 160740 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | | || | ||| | ||| ||||| Sbjct 160739 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTATCCGACGACTCGACC 160680 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| || || ||||| || || |||||||| ||||| Sbjct 160679 TCCAAAGTGATGGTCTTTCCCGTGAGCGTCTTGACAAAGATTTGCAT 160633 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || || ||||| | ||| ||| ||||| |||||||||||||| Sbjct 160403 CCACCACGAAGTCGCAAGACAAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCGGAA 160344 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||| |||||||||||||| || |||||||| ||| Sbjct 160343 AGGGTGCGGCCATCCTCGAGTTGCTTTCCTGCGAAAATGAGACGTTGCTGGTCAGGGGGA 160284 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | || | || | ||||| || Sbjct 160283 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCCGAGGATTCAACT 160224 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| |||||||| | || || |||||||||||||| Sbjct 160223 TCGAGAGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 160177 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || ||| ||||| || || || || ||||| |||||||||||||| Sbjct 160631 CCACCGCGGAGTCGCAACACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAA 160572 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| | || || | |||||| || || || ||||| ||||||||||| || Sbjct 160571 AGAGTACGGCCATCCTCGAGCTGCTTACCGGCAAAGATGAGTCGCTGCTGGTCAGGTGGG 160512 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| || || ||||| | | | |||| || | || || || Sbjct 160511 ATACCTTCCTTGTCCTGGATTTTCGCCTTTACGTTGTCGATCGTGTCCGAGGACTCAACC 160452 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || || ||||| ||||| || |||||||||||||| Sbjct 160451 TCGAGAGTGATCGTCTTTCCGGTCAGAGTCTTGACAAAGATCTGCAT 160405 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || || | || |||||||| || || || || Sbjct 160139 TCCTTCTGGATGTTGTAGTCCGAAAGGGTTCGTCCATCTTCCAACTGTTTACCGGCAAAG 160080 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| |||||||||||| || | || ||||||||| ||||| ||| | | | Sbjct 160079 ATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG 160020 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | |||| || ||||| || | |||||||| ||||||||||| || || || Sbjct 160019 TCAATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACG 159960 Query 34379 AAGATCTGCATCGC 34392 ||||||||||| || Sbjct 159959 AAGATCTGCATGGC 159946 >seq18 Length=238221 Score = 114 bits (126), Expect = 8e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||| ||||| | ||| || ||||| ||||||||||| || Sbjct 147291 CCACCACGCAGGCGGAGCACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 147232 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| |||| || | ||||||||| || || || || ||||||||||| || Sbjct 147231 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCAGGTGGG 147172 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||| || ||||| ||| | | | | || | || | || || || Sbjct 147171 ATGCCCTCCTTATCTTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACC 147112 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||| ||||||||||| || || || |||||||||||| Sbjct 147111 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATC 147064 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||| ||||| | || || ||||| ||||||||||| || Sbjct 226371 CCACCACGCAGGCGGAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 226430 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| |||| || | |||||| || ||||| || || ||||||||||| ||| Sbjct 226431 AGGGTACGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCAGGGGGA 226490 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | || | || | || || || Sbjct 226491 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACC 226550 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||| || || ||||| || || ||||||||||||||| Sbjct 226551 TCGAGGGTGATGGTCTTACCCGTGAGGGTCTTAACAAAGATCTGCATC 226598 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||| || || |||| |||| || | ||||||||| || || Sbjct 147484 TTCCTTCTGGATGTTGTAGTCAGAGAGTGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAA 147425 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||| |||||||| ||| || | || |||||||| ||||| ||| | | Sbjct 147424 GATGAGACGCTGCTGATCGGGTGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 147365 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | || | || ||||| || | ||||| || |||||||| | ||| || || Sbjct 147364 GTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATCGTCTTGCCGGTCAAAGTCTTGAC 147305 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 147304 GAAGATCTGCAT 147293 >seq3372 Length=309 Score = 93.3 bits (102), Expect = 3e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34229 CGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTC 34288 ||| |||| || | |||||| || || || ||||| ||||||||||| ||| | | | Sbjct 10 CGGCCGTCTTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGGGGGATACCC 69 Query 34289 TCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACC 34348 |||||||| ||||| ||| | || | | || | |||| || || || || | Sbjct 70 TCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATTGTGTCGGAAGACTCCACCTCAAGG 129 Query 34349 GTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || |||||||| ||||| || |||||||||||||| Sbjct 130 GTGATCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 170 >seq25 Length=198755 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| || || || ||||| |||||||||||||| || ||| |||| Sbjct 152304 AGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCC 152245 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||| || || |||||||||||| ||| | || ||||||||| Sbjct 152244 TCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 152185 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | || | || ||||| || | |||||||| Sbjct 152184 TGGATCTTAGCCTTGACATTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTC 152125 Query 34358 TTGCCGGT 34365 || || || Sbjct 152124 TTACCTGT 152117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323011316174720