Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq141 179 8e-40 seq183 168 1e-36 >seq141 Length=34748 Score = 179 bits (198), Expect = 8e-40 Identities = 778/1203 (65%), Gaps = 37/1203 (3%) Strand=Plus/Plus Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877 ||| | ||||| | ||||| || || ||| || || |||||| || | |||||| Sbjct 29610 TACAACTTCTTCGGCTTCAAGACCCTCGAGCGCTCCTACCTCCTCCGCATCAACGGCAAG 29669 Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937 ||| || || ||||||||| | ||||| || || ||||| || ||| | ||| Sbjct 29670 GTCGCAGAGCGTCCCCAGCACATGCTCATGCGTGTCGCCGTCGGTATCCACGGTCAGGAC 29729 Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACA 248997 || | |||| ||||||| |||| | ||| || | | || || ||| | Sbjct 29730 ATCGCCAGCGCCATCGAGACCTACAACCTCATGTCGCAAAAGTACTTTACCCACGCCTCG 29789 Query 248998 CCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCC 249057 || || |||||||||||||||||| || ||||| ||||| || || | || Sbjct 29790 CCCACCCTCTTCAACGCCGGTACCCCTCACCCGCAGCTCTCGTCGTGTTTCCTCGTCACC 29849 Query 249058 ATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAA-ACAGACGGCGAAGATTTC 249116 ||| | |||||||| |||||||||| || |||||||| || || | || | ||| || Sbjct 29850 ATGAAGGACGACTCCATCGACGGCATCTACGACACGCTCAAGACCTGC-GCCATGATCTC 29908 Query 249117 TAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACAT 249176 || ||| || || ||||||||| | || | |||||| | | || || ||||| Sbjct 29909 CAAGACCGCCGGTGGTATCGGTCTCAACATCCACTGCATCCGTGGCACTGGCTCCTACAT 29968 Query 249177 CAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCAC 249236 || || || || || || | |||||||| ||| | || || ||| | ||| Sbjct 29969 TGCCGGCACCAACGGTGTTAGCAACGGTATCGTTCCCATGCTCCGCGTCTTCAACAACAC 30028 Query 249237 CGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGA 249293 |||| | | | || |||||| || | || || | || ||||| || | || Sbjct 30029 CGCCCGCTACGTCGACCAGGGTGGCAACAAGCGTCCCGGTGCCTTTGCCATCTACATTGA 30088 Query 249294 AGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCT 249353 |||||| | || | || |||||||| ||| | |||||| |||| || ||| Sbjct 30089 GCCATGGCACTCGGACGTCTTTGAGTTCCTCGACCTCCGCAAGAACCACGGTAAGGAGGA 30148 Query 249354 CATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGT 249413 | | || ||||| |||||||||| ||| ||||| |||| | |||||| || || Sbjct 30149 GGTTCGTGCTCGTGAGCTCTTCTACGCCCTCTGGGTTCCCGATCTCTTCATGAAGCGTGT 30208 Query 249414 CAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGA-CGCCCCGGACCTCATCGATC 249472 | || |||| || ||| | || | | || ||| ||||||| ||| ||| | Sbjct 30209 CGAGCAGAACGGTGACTGGTCCCTCATGTGCCCCAACGAGTGCCCCGG-TCTCGCCGA-C 30266 Query 249473 TAC-ACGGCGCCGACTTCGACCAAGCCTATAAGAAATACGAATCCAACGGCATCGGCAAG 249531 | | |||||| ||| ||||| | ||| || ||||| || | ||| | |||| Sbjct 30267 TGCTACGGCGACGAGTTCGAGCGTCTCTACGAGCGCTACGAGGCCGAGGGCCGTGCCAAG 30326 Query 249532 ---ACAATCAAGGCTCGGACCCT-TTTTGCGAAGGTGGTGGAGTCCCAGATAGAGACAGG 249587 || ||||||||| || || | | || | | |||||||||| ||||| || Sbjct 30327 CGCACTGTCAAGGCTCAGAAGCTCTGGTACG-CCATCCTCGAGTCCCAGACCGAGACTGG 30385 Query 249588 GGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCAACGGCATCTTG 249646 || | | || | | ||| ||||| |||| |||||| ||||| | | || | Sbjct 30386 TAACCCCT-TCATCCTCTACAAGGACGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCG 30444 Query 249647 GTACCATCCGCTCGTCAAATCTCTGTGCA--GAGGTGATTCAATACTCGTCCAAGGAGGA 249704 | |||||| | || || || |||||| ||| | || | ||| || || || Sbjct 30445 GCACCATCAAGTGCTCCAA-CT-TGTGCACCGAGATCATCGAGTACAGTGCCCCCGACGA 30502 Query 249705 GATTGCCGTCTGCAACCTGGCAAGCATCAATCTCGTGAGGCACGT-GAGGGCG--GACAG 249761 | | |||||||||||| |||| |||| ||| | | | || || || Sbjct 30503 GGTCGCCGTCTGCAACTTGGCTTCCATCGCCCTCCCCACCTTCATCGACCCCGTCACCAA 30562 Query 249762 GACGTTCGACTTCGAGCGTCTTCACCGGACGGCGAAACAGGCGAT---CAAAAACCTCAA 249818 ||| | ||||||| ||||||| ||| || | || | |||| || ||| |||||||| Sbjct 30563 GACCTACGACTTCAAGCGTCTCCAC--GAGGTCGCCA-AGGCCATCTGCAAGAACCTCAA 30619 Query 249819 CAAGGTGATTGATGTCAATTTTTACCCCCTTGAGGA---ATGCAGGTTGTCCAACATGAA 249875 |||| | || || |||| | |||||| | ||||| |||| |||||||||| Sbjct 30620 CAAGATCATCGACATCAACTACTACCCCGTCGAGGAGGCTCGCAG---GTCCAACATGCG 30676 Query 249876 GCACCGTCCATGTGGGCTGGGCGTTCAGGCACTGCACGACGTCTACATGGTGATGGGATT 249935 || ||||| || | || || |||| || ||||| || |||| | ||||| | Sbjct 30677 CCATCGTCCCATCGGTATCGGTGTCCAGGGTCTCGCCGACGCCTTCATGATCATGGGCTA 30736 Query 249936 CCCCTTCGAGTCAGAGGAGGCAGCGACG-CTAAATAAACAGATTTTCGAGACCATCTATC 249994 | | |||||||| ||||| || || || || ||||| |||||||||||||| | Sbjct 30737 CGCTTTCGAGTCGCCCGAGGC-TCGTCGTCTCAACGTCCAGATCTTCGAGACCATCTACC 30795 Query 249995 ACG 249997 ||| Sbjct 30796 ACG 30798 >seq183 Length=12310 Score = 168 bits (186), Expect = 1e-36 Identities = 274/386 (71%), Gaps = 30/386 (8%) Strand=Plus/Minus Query 254011 TGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAA 254070 |||| ||| |||| ||||| || || ||||||||||| |||||| |||||||||| ||| Sbjct 5823 TGCTATTCTACGGCCCTCCTGGTACGGGCAAGACGTCGACCATCTTGGCGCTGGCACGAC 5764 Query 254071 CCCTGTTGGGCGAGGGGAAC--ATGAGAGA-GCGCGTGCTCGAGCTGAACGCTTCTGACG 254127 || || ||| |||| |||| ||| ||| ||||||||||| |||||||| |||| Sbjct 5763 AGCTCTTCGGC--CCCGAACTGATGA-AGACGCGAGTGCTCGAGCTCAACGCTTCCGACG 5707 Query 254128 AACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGATGTCGATTTCGT 254187 |||| || | |||||| | || |||||||||| ||| ||||| ||| ||| Sbjct 5706 AACGAGGTATCAGTGTCGTCAGGGAAAAGATCAAGAACTTCGCCAAG--CTCG---CCGT 5652 Query 254188 CGTTCCAACCC-------GGC------TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAG 254234 | ||||||| ||| ||||| ||||||||| || | ||||| |||||| Sbjct 5651 C--ACCAACCCCAAAGAAGGCTTCCCGTGTCCACCTTTCAAGATCATCATCCTCGACGAG 5594 Query 254235 GCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCC 254294 ||||| | ||||||| || |||||||||||| | | || | ||||| | | | Sbjct 5593 GCGGATAGCATGACGCAAGATGCGCAGTCCGCCTTGAGACGTATCATGGAACAGTA--CA 5536 Query 254295 GTTG--TGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATCGCCCCGCTGG 254352 || | | ||| | || || ||||| ||||||||||| | ||||||| ||||| | Sbjct 5535 GTAGGATCACGAGGTTCTGTCTGGTATGCAACTACGTCACTCGTATCATCGAGCCGCTCG 5476 Query 254353 CTTCTCGGTGCGCCAAGTTTCGATTC 254378 | || || ||| |||||| || ||| Sbjct 5475 CCTCGCGATGCAGCAAGTTCCGCTTC 5450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073554367375616