Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq141 334 7e-87 seq18 113 4e-20 seq27 111 1e-19 seq3372 96.9 3e-15 >seq141 Length=34748 Score = 334 bits (370), Expect = 7e-87 Identities = 653/961 (68%), Gaps = 8/961 (1%) Strand=Plus/Minus Query 23017 GACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAAT 23076 || |||||| || || | ||||| ||||| |||||||| || ||||||| | || Sbjct 30536 GAGGGCGATGGAAGCCAAGTTGCAGACGGCGACCTCGTCGGGGGCACTGTACTCGATGAT 30477 Query 23077 TTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATT 23136 ||||| || | ||| ||||| || ||||| | || |||||||||| || || || Sbjct 30476 CTCGGTGCACAAGTTGGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTT 30417 Query 23137 GCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 | | ||||||||||| ||| | || | || |||||| ||| ||||||| ||| || Sbjct 30416 GGCAGCGTCCTTGTAGAGGATGAAGGGGTTACCAGTCTCGGTCTGGGACTCGAGGATGGC 30357 Query 23197 TCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTG 23256 ||| | ||||||| | ||| ||| | | ||| || ||||||| | Sbjct 30356 GTACCAGAGCTTCTGAGCCTTGACAGTGCGCTTGGCACGGCCCTCGGCCTCGTAGCGCTC 30297 Query 23257 GTACA-ACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGAC 23315 ||| | |||| || || ||| | ||||| |||||||| || ||||| | | | || | Sbjct 30296 GTAGAGACGC-TCGAACTCGTCGCCGTAGCAGTCGGCGAGACCGGGGCACTCGTTGGGGC 30238 Query 23316 ACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATA 23375 ||||||| ||| || | || || || |||| || ||||| || | ||| | Sbjct 30237 ACATGAGGGACCAGTCACCGTTCTGCTCGACACGCTTCATGAAGAGATCGGGAACCCAGA 30178 Query 23376 GAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCA 23435 | |||||||| || || || || || |||||||| || ||| |||||| | || | Sbjct 30177 GGGCGTAGAAGAGCTCACGAGCACGAACCTCCTCCTTACCGTGGTTCTTGCGGAGGTCGA 30118 Query 23436 AAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 || || || ||||||| ||||| ||||| | ||| | |||||| || || || | || Sbjct 30117 GGAACTCAAAGACGTCCGAGTGCCATGGCTCAATGTAGATGGCAAAGGCACCGGGACGCT 30058 Query 23496 TATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGA 23555 | ||||| ||||| |||||||| ||||| ||||||||| | || | ||||| || |||| Sbjct 30057 TGTTGCCACCCTGGTCGACGTAGCGGGCGGTGTTGTTGAAGACGCGGAGCATGGGAACGA 29998 Query 23556 GACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAA 23615 ||||||| | ||| ||| || | || || | | || | | ||| | Sbjct 29997 TACCGTTGCTAACACCGTTGGTGCCGGCAATGTAGGAGCCAGTGCCACGGATGCAGTGGA 29938 Query 23616 CGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGT 23675 || || ||| || || ||| | | || || ||||| ||||| || || ||||||| Sbjct 29937 TGTTGAGACCGATACCACCGGCGGTCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCGT 29878 Query 23676 AGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTT 23735 ||||||| |||||| ||| || || | | ||| | ||||||||| || | |||| | Sbjct 29877 AGATGCCGTCGATGGAGTCGTCCTTCATGGTGACGAGGAAACACGACGAGAGCTGCGGGT 29818 Query 23736 TGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTA 23795 || ||| |||| ||| || || || |||||| |||||||| | |||||| | Sbjct 29817 GAGGGGTACCGGCGTTGAAGAGGGTGGGCGAGGCGTGGGTAAAGTACTTTTGCGACATGA 29758 Query 23796 GATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCA 23855 | ||||| || ||||||||| | ||||||| ||||| ||||||| |||||| |||| Sbjct 29757 GGTTGTAGGTCTCGATGGCGCTGGCGATGTCCTGACCGTGGATACCGACGGCGACACGCA 29698 Query 23856 TCATCATGTATTGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAACAGATATGAAC 23912 | | ||||| || || | || ||||| | |||||| || || || || || | Sbjct 29697 TGAGCATGTGCTGGGGACGCTCTGCGACCTT---GCCGTTGATGCGGAGGAGGTAGGAGC 29641 Query 23913 GTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCG 23972 | | | || || || || || ||| |||| |||||||| |||| | ||||||| Sbjct 29640 GCTCGAGGGTCTTGAAGCCGAAGAAGTTGTAGTGGAAGTCACGCTCGTAGATGATGGCCG 29581 Query 23973 A 23973 | Sbjct 29580 A 29580 >seq18 Length=238221 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||| |||| ||||| ||||||||| |||| || || | || Sbjct 147293 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACGATCACCCTCGAGGTCGAGTCCTCG 147352 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||||||| | || ||||| ||| Sbjct 147353 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCACCCGATCAG 147412 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || || ||||| ||| | || ||| || | || || ||| Sbjct 147413 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACACTCTCTGACTACAAC 147472 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || |||||||| |||||||| || || Sbjct 147473 ATCCAGAAGGAATCGACGCTTCATCTCGTCCT 147504 >seq27 Length=198227 Score = 111 bits (122), Expect = 1e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| || |||||| |||| || || | || Sbjct 159948 CATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTC 160007 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | ||||| | || ||||||||| ||| | ||||||||||| Sbjct 160008 CGACACCATTGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCA 160067 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||| || || || || |||||||||||||| Sbjct 160068 GCAGCGTCTCATCTTTGCCGGTAAACAGTTGGAAGA 160103 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||||||||| || || |||||||| |||| ||||| | || Sbjct 160405 ATGCAGATCTTTGTCAAGACTCTGACCGGAAAGACGATCACTCTCGAGGTTGAGTCCTCG 160464 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || ||| |||||||||||| | || || |||||| Sbjct 160465 GACACGATCGACAACGTAAAGGCGAAAATCCAGGACAAGGAAGGTATCCCACCTGACCAG 160524 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| || || || || || || ||| | || || Sbjct 160525 CAGCGACTCATCTTTGCCGGTAAGCAGCTCGAGGA 160559 >seq3372 Length=309 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||||||||| ||||| ||||||||| | || || || | ||| Sbjct 170 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACGATCACCCTTGAGGTGGAGTCTTCC 111 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| || | || || |||||| Sbjct 110 GACACAATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAG 51 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||||| || || ||||| || ||| | |||||| Sbjct 50 CAGCGTCTCATCTTTGCTGGTAAGCAGCTTGAAGAC 15 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445680523103040