Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq141 140 4e-28 >seq141 Length=34748 Score = 140 bits (154), Expect = 4e-28 Identities = 442/681 (65%), Gaps = 8/681 (1%) Strand=Plus/Minus Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293 || ||||| | ||||| || |||| | || || || ||||| |||||||| |||| | Sbjct 30241 GGGCACATGAGGGACCAGTCACCGTTCTGCTCGACACGCTTCATGAAGAGATCGGGAACC 30182 Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353 || || || || || || | | | | ||||| || || ||||| || Sbjct 30181 CAGAGGGCGTAGAAGAGCTCACGAGCACGAACCTCCTCCTTACCGTGGTTCTTGCGGAGG 30122 Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413 ||||||||| | | | || || ||||| || || | ||| ||||| | | || || Sbjct 30121 TCGAGGAACTCAAAGACGTCCGAGTGCCATGGCTCAATGTAGATGGCAAAGGCACCGGGA 30062 Query 63414 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63473 || ||||| || ||||| || | ||| | |||||||| || | || | | ||| ||| Sbjct 30061 CGCTTGTTGCCACCCTGGTCGACGTAGCGGGCGGTGTTGTTGAAGACGCGGAGCATGGGA 30002 Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTA 63533 | |||||||| | ||| ||||| |||| || ||| ||| || |||| || | Sbjct 30001 ACGATACCGTTGCTAACACCGTTGGTGCCGGCAATGTAGGAGCCAGTGCCACGGATGC-A 29943 Query 63534 CTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63592 | || | ||||| || || || || | || ||||| | ||||| || | ||| Sbjct 29942 GTGGATGTTGAGACCGATACCACCGGCGGTCTTGGAGATCATGGCGCAGGTCTTGAGCGT 29883 Query 63593 GTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTG 63652 ||| |||||||| || ||| || || ||||| | | || ||||| || | || Sbjct 29882 GTCGTAGATGCCGTCGATGGAGTCGTCCTTCATGGTGACGAGGAAACACGACGAGAGCTG 29823 Query 63653 GTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 63712 | ||| || || || || || | ||| || || ||||| ||||| | |||| || Sbjct 29822 CGGGTGAGGGGTACCGGCGTTGAAGAGGGTGGGCGAGGCGTGGGTAAAGTACTTTTGCGA 29763 Query 63713 AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGA---TGAATTCCTACTGC 63769 | || ||||| ||||| || || | | || ||| ||| || || || || || Sbjct 29762 CATGAGGTTGTAGGTCTCGATGGCGCTGGCGATGTCC---TGACCGTGGATACCGACGGC 29706 Query 63770 GACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTA 63829 ||||||||| | ||||||||| || | || | | ||| ||| || | | ||| Sbjct 29705 GACACGCATGAGCATGTGCTGGGGACGCTCTGCGACCTTGCCGTTGATGCGGAGGAGGTA 29646 Query 63830 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||| || | || || || || || ||||||| ||||| || ||||| || || Sbjct 29645 GGAGCGCTCGAGGGTCTTGAAGCCGAAGAAGTTGTAGTGGAAGTCACGCTCGTAGATGAT 29586 Query 63890 AACCGAATTGAGCTTATCCTT 63910 |||| | ||||| ||||| Sbjct 29585 GGCCGAGTCGAGCTGGTCCTT 29565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629696265639360