Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq141 123 3e-23 >seq141 Length=34748 Score = 123 bits (136), Expect = 3e-23 Identities = 467/729 (64%), Gaps = 8/729 (1%) Strand=Plus/Minus Query 65979 CGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAAC 66038 || ||||||||||| || | | | | | || || || || | || ||||| | Sbjct 30289 CGCTCGAACTCGTCGCCGTAGCAGTCGGCGAGACCGGGGCACTCGTTGGGGCACATGAGG 30230 Query 66039 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 66098 ||||| || |||| | || || || ||||| |||||||| |||| ||| || || Sbjct 30229 GACCAGTCACCGTTCTGCTCGACACGCTTCATGAAGAGATCGGGAACCCAGAGGGCGTAG 30170 Query 66099 AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 66158 || | || | | | | ||||| || || ||||| || ||||||||| | Sbjct 30169 AAGAGCTCACGAGCACGAACCTCCTCCTTACCGTGGTTCTTGCGGAGGTCGAGGAACTCA 30110 Query 66159 ATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 66218 | | || | ||||| || || | ||| ||||| | | || || || ||||| || Sbjct 30109 AAGACGTCCGAGTGCCATGGCTCAATGTAGATGGCAAAGGCACCGGGACGCTTGTTGCCA 30050 Query 66219 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 66278 ||||| || | ||| | |||||||| || | || | | ||| |||| ||||| ||| Sbjct 30049 CCCTGGTCGACGTAGCGGGCGGTGTTGTTGAAGACGCGGAGCATGGGAACGATACCGTTG 29990 Query 66279 GATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT-AG 66337 ||| ||||| |||| || ||| ||| | |||| || | | || | || Sbjct 29989 CTAACACCGTTGGTGCCGGCAATGTAGGAGCCAGTGCCACGGATGC-AGTGGATGTTGAG 29931 Query 66338 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 66397 ||| || || || || | || ||||| | ||||| || | ||| || |||||||| Sbjct 29930 ACCGATACCACCGGCGGTCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGATGCC 29871 Query 66398 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 66457 || || || ||| ||||| | | || ||||| || | || | || || Sbjct 29870 GTCGATGGAGTCGTCCTTCATGGTGACGAGGAAACACGACGAGAGCTGCGGGTGAGGGGT 29811 Query 66458 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 66517 || || || || | ||| || || ||||| ||||| | |||| || | || ||||| Sbjct 29810 ACCGGCGTTGAAGAGGGTGGGCGAGGCGTGGGTAAAGTACTTTTGCGACATGAGGTTGTA 29751 Query 66518 CGTCTCAATAGCTGAGTCTATATCCCATTGA---TGAATTCCTACTGCGACACGCATTAA 66574 ||||| || || | | || ||| ||| || || || || ||||||||||| | Sbjct 29750 GGTCTCGATGGCGCTGGCGATGTCC---TGACCGTGGATACCGACGGCGACACGCATGAG 29694 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 ||||||||| || | || ||| |||| ||| || | | |||||| || | Sbjct 29693 CATGTGCTGGGGACGCTCTGCGACCTTGCCGTTGATGCGGAGGAGGTAGGAGCGCTCGAG 29634 Query 66635 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 66694 || || || || || ||||||| ||||| || ||||| || || |||||| ||| Sbjct 29633 GGTCTTGAAGCCGAAGAAGTTGTAGTGGAAGTCACGCTCGTAGATGATGGCCGAGTCGAG 29574 Query 66695 TTTATCCTT 66703 | ||||| Sbjct 29573 CTGGTCCTT 29565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658046003010080