Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq75 96.9 2e-15 seq25 84.2 2e-11 >seq75 Length=98333 Score = 96.9 bits (106), Expect = 2e-15 Identities = 280/425 (66%), Gaps = 12/425 (3%) Strand=Plus/Plus Query 22741 CGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATA 22800 |||||| | ||||| || ||||| || || || | || || || || || || |||| Sbjct 64376 CGTCTCGTTGCCTTCGCCGCTGTCGAGGGTATCTTCTTCTCCGGTTCCTTCGCCTCCATC 64435 Query 22801 TTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGC 22860 |||||||| ||||| ||| |||||||| || | | || ||||||||| | || Sbjct 64436 TTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTCACTTTCTCCAACGAGCTCATCTCG 64495 Query 22861 CGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAA 22920 |||||||||||||| ||| |||||||| || | || || || || | || | Sbjct 64496 CGTGACGAAGGTCTGCACACCGACTTTGCCTGCCTCCTCTTCAGCCACCTCAAGAAGCGA 64555 Query 22921 CCGTGTCAGG--ACGATGCACATCAAATCATATCTGATGCCGTTGACATTGAGACGGCTT 22978 || | || || ||| || ||||||| | || ||||| || || |||| |||| Sbjct 64556 GCGCACCCGGACACCGTGCTCA--AAATCATCACCGAGGCCGTGGAAATCGAGAAAGCTT 64613 Query 22979 TCTTCCAAGAGGCACTAAAGACACCCCTACTTGGTATGAA-TAGTGACAGTATGAGACTG 23037 || || || || || | | | |||| ||||| | | | | ||| | | | Sbjct 64614 TCCTCACCGACGCTCTCCCCGTATCTTTGATTGGCATGAACTCGAAATTG-ATGTGCCAG 64672 Query 23038 TACATACAGTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTATAAC 23097 |||||| ||| || || || || ||||| | | | || || | | | | || || Sbjct 64673 TACATAGAGTACGTGGCTGACCGTCTGCTTGTTTCGCTTGGAAACCC---GGTCCATTAC 64729 Query 23098 GTTGC---CAATCCATTTGATTTCATGGATAACATTAGCATTGAAGGTAAAACAAACTTC 23154 | || ||| || ||||| |||||||| ||||| || || |||| || || |||||| Sbjct 64730 GGCGCCAGCAACCCCTTTGACTTCATGGAAAACATAAGTCTTCAAGGAAAGACCAACTTC 64789 Query 23155 TTTGA 23159 || || Sbjct 64790 TTCGA 64794 >seq25 Length=198755 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 33571 CCAGAGATGGGCGACAAGTTTGCATCG-TTCACGGCCCAGAAGGGCACGTGCGGCATGAT 33629 || ||| | ||||||||||| | ||| |||||| |||||||||| | ||| |||| Sbjct 170194 CCGGAGCTCGGCGACAAGTTCTCCTCGCGTCACGG-CCAGAAGGGCGTGGTCGGACTGAT 170252 Query 33630 GTACGACCAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGTCATCAA 33689 | | ||| || ||||||||||| | | | ||| | ||||||| | |||| || Sbjct 170253 CGTCCAGCAGGAAGATATGCCGTTCACCGACCAGGGCATCAACCCGGACATCATCATGAA 170312 Query 33690 CCCGCATGCGTTCCCCTCGCGCATGACGGT 33719 ||||| | |||||||||||||||||||| Sbjct 170313 TCCGCACGGCTTCCCCTCGCGCATGACGGT 170342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356166687307036