Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq18 111 2e-19 seq3372 104 2e-17 seq27 93.3 4e-14 >seq18 Length=238221 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| ||| || || || || ||||| || || | ||| | ||| |||||||| Sbjct 147495 TGAAGCGTCGATTCCTTCTGGATGTTGTAGTCAGAGAGTGTACGGCCGTCCTCGAGCTGC 147436 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || ||| |||| ||||| ||||||||||| || |||||||| ||||| ||| || Sbjct 147435 TTGCCGGCAAAGATGAGACGCTGCTGATCGGGTGGGATGCCTTCCTTGTCCTGGATCTTG 147376 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | ||||| | || ||| ||||| | ||| | ||||||||||||| Sbjct 147375 GCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATCGTCTTGCCGGTC 147316 Query 139742 AACGTTTTTACGAATATTTGCATA 139765 || || || ||||| || |||||| Sbjct 147315 AAAGTCTTGACGAAGATCTGCATA 147292 >seq3372 Length=309 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 |||||| ||||| ||||||||| |||| ||||| ||||| || || || || || || || Sbjct 15 GTCTTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGGGGGATACCCTCCTT 74 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || || | | || | |||||||| | ||||||||||| ||| | Sbjct 75 GTCCTGGATCTTGGCCTTGACATTGTCGATTGTGTCGGAAGACTCCACCTCAAGGGTGAT 134 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||||||||||| || || || || || |||||| Sbjct 135 CGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCATA 171 >seq27 Length=198227 Score = 93.3 bits (102), Expect = 4e-14 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || ||||| || || ||||| || || Sbjct 160175 CCACCACGGAGACGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 160116 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | ||||| | ||||||||| ||| |||| ||||| ||||| ||||| || Sbjct 160115 AGGGTTCGTCCA-TCTTCCAACTGTTTACCGGCAAAGATGAGACGCTGCTGGTCGGGCGG 160057 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCA 139715 ||||| || ||||| ||| | || | || | | || || |||||| || ||| | Sbjct 160056 GATGCCCTCCTTGTCC-TGAATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGA 159998 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGC 139767 |||| | ||| | ||||||||||| | || || ||||| || ||||| || Sbjct 159997 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGGC 159946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495968433270400