Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq141 136 6e-27 >seq141 Length=34748 Score = 136 bits (150), Expect = 6e-27 Identities = 470/729 (64%), Gaps = 8/729 (1%) Strand=Plus/Minus Query 79858 CGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAAC 79917 || ||||||||||| || | ||| | | || || || |||| || ||||| | Sbjct 30289 CGCTCGAACTCGTCGCCGTAGCAGTCGGCGAGACCGGGGCACTCGTTGGGGCACATGAGG 30230 Query 79918 GACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 79977 ||||| || || | | || || || ||||| |||||||| |||| ||| || || Sbjct 30229 GACCAGTCACCGTTCTGCTCGACACGCTTCATGAAGAGATCGGGAACCCAGAGGGCGTAG 30170 Query 79978 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 80037 || || || | | | | |||||| || || ||||| || ||||||||| | Sbjct 30169 AAGAGCTCACGAGCACGAACCTCCTCCTTACCGTGGTTCTTGCGGAGGTCGAGGAACTCA 30110 Query 80038 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCT 80097 | | || || ||||| || || | ||| ||||| | | || || || ||||| || Sbjct 30109 AAGACGTCCGAGTGCCATGGCTCAATGTAGATGGCAAAGGCACCGGGACGCTTGTTGCCA 30050 Query 80098 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 80157 ||||| || | ||| | |||||||| || | || | | ||| |||| ||||| ||| Sbjct 30049 CCCTGGTCGACGTAGCGGGCGGTGTTGTTGAAGACGCGGAGCATGGGAACGATACCGTTG 29990 Query 80158 GATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT-AG 80216 ||| ||||| |||| || ||| ||| || |||| || | | || | || Sbjct 29989 CTAACACCGTTGGTGCCGGCAATGTAGGAGCCAGTGCCACGGAT-GCAGTGGATGTTGAG 29931 Query 80217 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 80276 ||| || || || || | || ||||| | ||||| || | ||| || |||||||| Sbjct 29930 ACCGATACCACCGGCGGTCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGATGCC 29871 Query 80277 CTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 80336 || ||| || || ||||| | | || ||||| || | || | || || Sbjct 29870 GTCGATGGAGTCGTCCTTCATGGTGACGAGGAAACACGACGAGAGCTGCGGGTGAGGGGT 29811 Query 80337 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 80396 || || || || | ||| || || ||||| ||||| | |||| |||| || ||||| Sbjct 29810 ACCGGCGTTGAAGAGGGTGGGCGAGGCGTGGGTAAAGTACTTTTGCGACATGAGGTTGTA 29751 Query 80397 CGTCTCAATAGCTGATTCTATATCCCATTGA---TGAATTCCTACCGCGACACGCATTAA 80453 ||||| || || | || ||| ||| || || || || ||||||||||| | Sbjct 29750 GGTCTCGATGGCGCTGGCGATGTCC---TGACCGTGGATACCGACGGCGACACGCATGAG 29694 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 ||||||||| || | || ||| |||| || || | | ||| || || | Sbjct 29693 CATGTGCTGGGGACGCTCTGCGACCTTGCCGTTGATGCGGAGGAGGTAGGAGCGCTCGAG 29634 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 80573 || || || || || ||||||| ||||| || ||||| || || |||||| ||| Sbjct 29633 GGTCTTGAAGCCGAAGAAGTTGTAGTGGAAGTCACGCTCGTAGATGATGGCCGAGTCGAG 29574 Query 80574 TTTATCCTT 80582 | ||||| Sbjct 29573 CTGGTCCTT 29565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718130425515680