Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq27 98.7 8e-16 >seq27 Length=198227 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | || | || | |||||||||||| || | ||||| || ||| Sbjct 160859 CCGCCACGCAGACGGAGGACAAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCCGAC 160800 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| |||| ||||| || || || ||||| ||||| ||||| || |||| || Sbjct 160799 AGGGTACGACCGTCCTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCGGGTGGG 160740 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| || || || |||| | ||||| || ||| || || | |||||| Sbjct 160739 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTATCCGACGACTCGACC 160680 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || ||||| || || || || ||||| |||||||| Sbjct 160679 TCCAAAGTGATGGTCTTTCCCGTGAGCGTCTTGACAAAGATTTGCAT 160633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381297965917896