Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq141 134 2e-26 >seq141 Length=34748 Score = 134 bits (148), Expect = 2e-26 Identities = 472/731 (65%), Gaps = 12/731 (2%) Strand=Plus/Minus Query 71941 CGTTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCAA 71999 || ||||||||||| || | ||| | | | | || || || || || || ||||| | Sbjct 30289 CGCTCGAACTCGTCGCCGTA-GCAGTCGGCGAGACCGGGGCACTCGTTGGGGCACATGAG 30231 Query 72000 TGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 72059 ||||| || || | | | || || ||||| |||||||| |||| ||| || || Sbjct 30230 GGACCAGTCACCGTTCTGCTCGACACGCTTCATGAAGAGATCGGGAACCCAGAGGGCGTA 30171 Query 72060 AAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 72119 || || || | | | | |||||| || || ||||| || ||||||||| | Sbjct 30170 GAAGAGCTCACGAGCACGAACCTCCTCCTTACCGTGGTTCTTGCGGAGGTCGAGGAACTC 30111 Query 72120 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCC 72179 | | || || ||||| || || | ||| ||||| | | || || || ||||| || Sbjct 30110 AAAGACGTCCGAGTGCCATGGCTCAATGTAGATGGCAAAGGCACCGGGACGCTTGTTGCC 30051 Query 72180 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 72239 ||||| || | ||| | |||||||| || | || | | ||| |||| ||||| || Sbjct 30050 ACCCTGGTCGACGTAGCGGGCGGTGTTGTTGAAGACGCGGAGCATGGGAACGATACCGTT 29991 Query 72240 GGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGAT 72297 | |||| ||||| |||| || ||| ||| || |||| || | || |||| Sbjct 29990 GCTAACACCGTTGGTGCCGGCAATGTAGGAGCCAGTGCCACGGATGCAGTGGATGTTGA- 29932 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 |||| || || || || | || ||||| | ||||| || | ||| || |||||| Sbjct 29931 -GACCGATACCACCGGCGGTCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGATG 29873 Query 72358 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 72417 || || || || ||| ||||| | | || ||||| || | || | || Sbjct 29872 CCGTCGATGGAGTCGTCCTTCATGGTGACGAGGAAACACGACGAGAGCTGCGGGTGAGGG 29813 Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 || || || || || | ||| || || ||||| ||||| | |||| |||| || ||| Sbjct 29812 GTACCGGCGTTGAAGAGGGTGGGCGAGGCGTGGGTAAAGTACTTTTGCGACATGAGGTTG 29753 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGA---TGTATTCCTACCGCGACACGCATT 72534 || ||||| || || | || ||| ||| || || || || ||||||||||| Sbjct 29752 TAGGTCTCGATGGCGCTGGCGATGTCC---TGACCGTGGATACCGACGGCGACACGCATG 29696 Query 72535 AACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCC 72594 | ||| ||||| || | || ||| |||| || || | | |||||| || Sbjct 29695 AGCATGTGCTGGGGACGCTCTGCGACCTTGCCGTTGATGCGGAGGAGGTAGGAGCGCTCG 29636 Query 72595 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTG 72654 | || || || || || ||||||| ||||| || ||||| || || |||| | | Sbjct 29635 AGGGTCTTGAAGCCGAAGAAGTTGTAGTGGAAGTCACGCTCGTAGATGATGGCCGAGTCG 29576 Query 72655 AGTTTATCCTT 72665 || | ||||| Sbjct 29575 AGCTGGTCCTT 29565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671009905033120