Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq18 102 8e-17 seq27 87.8 2e-12 >seq18 Length=238221 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | || | ||||| || ||||| || || |||||||| || Sbjct 147520 GCCACCACGCAGACGGAGGACGAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCAGA 147461 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||| | ||| ||||| || || || ||| |||| ||||| ||||||||||| || Sbjct 147460 GAGTGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCGGGTGG 147401 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| || || || | | || | ||||||| || || || Sbjct 147400 GATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGAC 147341 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||||||||||||| || || ||||| || |||||| Sbjct 147340 CTCGAGGGTGATCGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCATA 147292 >seq27 Length=198227 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 ||||| || | || | || ||||| || || |||||||| ||| | |||| Sbjct 160391 CGCAAGACAAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCA 160332 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 || |||||||| || || || | || ||||||||||| || || || ||||| || ||| Sbjct 160331 TCCTCGAGTTGCTTTCCTGCGAAAATGAGACGTTGCTGGTCAGGGGGAATGCCCTCCTTG 160272 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || || || | | || | ||||||| || ||| ||||| | ||| | Sbjct 160271 TCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCCGAGGATTCAACTTCGAGAGTGATG 160212 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||||||||||||| || || || || || |||||| Sbjct 160211 GTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCATA 160176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506916723675840