Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq75 257 2e-63 seq141 167 3e-36 seq48 93.3 6e-14 >seq75 Length=98333 Score = 257 bits (284), Expect = 2e-63 Identities = 581/855 (68%), Gaps = 35/855 (4%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| |||| ||||| ||||| | ||| || |||| || Sbjct 63971 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAAATCGACCTC 64030 Query 125079 TCCAAGGACCTGTACGATTGGGAGA-CTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 |||||||| || |||| ||||| | | | | || ||| ||||| | || || || Sbjct 64031 TCCAAGGATCTCCACGACTGGGACAACAAGCTCAACGACAAC-GAGCGTCACTTCATCTC 64089 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACAC 125196 ||| | | |||||||| |||| |||||| || ||||||||||| || || || || | Sbjct 64090 CCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGTATCGTCAACGAGAACCTTGTCGAG-C 64148 Query 125197 GATTCT-CTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATG 125255 | ||| ||| |||| | || |||| ||||| ||||| ||||| |||||| Sbjct 64149 GTTTCAGCTCTGAAGTTCAGGCCGCC-GAGGCCCGTTGCTTCTACGGTTTCCAGATCATG 64207 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC- 125314 || |||||| | |||||||| | ||||| || || |||| ||||| || || || Sbjct 64208 ATGGAGAACATCCACTCGGAGACCTACTCGCTCCTCATCGACACCTACATCCGTGAGCCC 64267 Query 125315 --GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCC-GTCTATACGTAAAAA 125371 ||| || | | |||||| |||| |||| || | || ||| | | | || Sbjct 64268 GAGCAGCGCGAGTTC---CTCTTTGACGCCGTCGAGACCATCCCCGTCGTCAAGCAGAA- 64323 Query 125372 GGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT---CTTCGTACGCCGACAGACT 125428 |||| | |||| | || |||||| ||||||| | || | |||||| | || Sbjct 64324 GGCTGACTGGGCTCTCCGATGGATCAG---CGACAAGCGCGCCTCTTTCGCCGAGCGTCT 64380 Query 125429 GGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTG 125488 || || |||||||| || ||||| |||||||| || ||| || || ||||||| || Sbjct 64381 CGTTGCCTTCGCCGCTGTCGAGGGTATCTTCTTCTCCGGTTCCTTCGCCTCCATCTTCTG 64440 Query 125489 GCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGA 125548 |||||||||||| || ||||||||||| || || | |||||| | || || || || Sbjct 64441 GCTCAAGAAGCGTGGTCTCATGCCCGGTCTCACTTTCTCCAACGAGCTCATCTCGCGTGA 64500 Query 125549 CGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTG 125608 ||| || || ||| ||||||||| || || || || || || | |||| | Sbjct 64501 CGAAGGTCTGCACACCGACTTTGCCTGCCTCCTCTTCAGCCAC-CTC-AAGAAGCGAGCG 64558 Query 125609 CAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGA 125668 || || | || | || |||| || | ||||| |||||| || || ||| Sbjct 64559 CA---CCCG----GACACCGTGCTCAAAATCATCACCGAGGCCGTGGAAATCGAGAAAGC 64611 Query 125669 GTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGA 125728 || || ||||| | || || || ||||||||||||||| || | |||||| | Sbjct 64612 TTTCCTCACCGACGCTCTCCCCGTATCTTTGATTGGCATGAACTCGAAATTGATGTGCCA 64671 Query 125729 GTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGAT---TTA 125785 ||||||||||| ||||| || ||||| || | | | |||| | | | ||| Sbjct 64672 GTACATAGAGTACGTGGCTGACCGTCTGCT---TGTTTCGCTTGGAAACCCGGTCCATTA 64728 Query 125786 CAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTT 125845 | ||||| || |||||||| |||||| | |||| || | || ||||||||||| Sbjct 64729 CGGCGCCAGCAACCCCTTTGACTTCATGGAAAACATAAGTCTTCAAGGAAAGACCAACTT 64788 Query 125846 TTTCGAGAAGAAGGT 125860 |||||||| ||||| Sbjct 64789 CTTCGAGAAAAAGGT 64803 >seq141 Length=34748 Score = 167 bits (184), Expect = 3e-36 Identities = 308/448 (69%), Gaps = 8/448 (2%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || || | ||| ||||| | || || |||||| ||||| Sbjct 30045 CAGGGTGGCAACAAGCGTCCCGGTGCCTTTGCCATCTACATTGAGCCATGGCACTCGGAC 30104 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || ||||| || |||| | ||||| ||| || || |||| || || | || Sbjct 30105 GTCTTTGAGTTCCTCGACCTCCGCAAGAACCACGGTAAGGAGGAGGTTCGTGCTCGTGAG 30164 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC---AACGACGGTGGC 97052 | || || || |||||||| || ||| | ||||||||||| ||| | |||||| Sbjct 30165 CTCTTCTACGCCCTCTGGGTTCCCGATCTCTTCATGAAGCGTGTCGAGCAGAACGGTG-- 30222 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 ||||| ||| ||||||||| || || |||||||| |||| |||| ||||| ||| Sbjct 30223 -ACTGGTCCCTCATGTGCCCCAACGAGTGCCCCGGTCTCGCCGACTGCTACGGCGACGAG 30281 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCA 97172 || ||| ||| | ||||||| |||||||| | | | ||| | || Sbjct 30282 TTCGAGCGTCTCTACGAGCGCTACGAGGCCGAGGGCCGTGCCAAGCGCACTGTCAAGGCT 30341 Query 97173 CGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCT 97231 | |||| || ||| | |||||| | | | ||| |||||||| | || | ||| || Sbjct 30342 C-AGAAGCTCTGGTACGCCATCCTCGAGTCCCAGACCGAGACTGGTAACCCCTTCATCCT 30400 Query 97232 CTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTC 97291 ||||||||| | | || ||||| |||||||| || | |||||||||||| |||| Sbjct 30401 CTACAAGGACGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGGCACCATCAAGTGCTC 30460 Query 97292 CAATCTGTGCACGGAAATTGTAGAGTAC 97319 ||| ||||||| || || | |||||| Sbjct 30461 CAACTTGTGCACCGAGATCATCGAGTAC 30488 Score = 96.9 bits (106), Expect = 5e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 98040 TACAAGACTGTCTGGGAGATTCCGACC-AAGACGCTGATCGATATGGCTGCCGACAGAGG 98098 |||||||| ||||||||||| | | | ||| | | || || |||||||||||| | || Sbjct 31224 TACAAGACCGTCTGGGAGAT-CAGCCAGAAGGCCATCATTGACATGGCTGCCGACCGTGG 31282 Query 98099 TGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCG 98158 || | ||| |||| || ||| |||| | || || | | ||||||| ||| Sbjct 31283 TGCTTTCATCTGCCAGTCGCAGTCGCTCAACATCCACCTTTCGGCACCCACCTTTGGTCA 31342 Query 98159 TATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCT 98218 | || ||||| ||||| |||| |||||| ||||| |||||||| || | ||||| || Sbjct 31343 GCTCACCTCGATGCACTTCTACGGATGGAAGAAGGGTCTCAAGACCGGTACCTACTACCT 31402 Query 98219 GAGAACAAAGTCGGCCACCAATGCCAT 98245 | || ||| | ||| |||| ||||| Sbjct 31403 CCGTACCAAGCCTGCCTCCAACGCCAT 31429 >seq48 Length=136349 Score = 93.3 bits (102), Expect = 6e-14 Identities = 399/619 (64%), Gaps = 34/619 (5%) Strand=Plus/Plus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| | ||||| | ||||| || ||||| | ||| |||||||| ||||| ||||| Sbjct 15336 TTGCGGAAGAAGATCATACCGGCACGGGGACCACGGAGGGTCTTGTGGGTTGTGGTGGTG 15395 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATG-ACTTTGCCCGCAATCAAGCCCGCA-A 127219 ||||||||||| ||||| |||||| | || || | | | |||| | || ||| | | Sbjct 15396 ACAATGTCACAGTACTCGAAGGGG-TTGTTCTGCACCTGGGCAGCAA-CGAGACCGGAGA 15453 Query 127220 TGTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATC--GGCAATCTC-TCGGAATC 127276 |||| ||||| |||||||| || | ||||| ||| || || ||||| || | Sbjct 15454 TGTGGGCAATGTCGGCCATGAGGTA--AGCCGACTGGGTCTTGGAGATCTCGGCGAGCTT 15511 Query 127277 GTCTATAGTCCAAGCGCCGAGGATA---GCAACTGGTGCCGGCTATGATTAGCCTAGGTT 127333 | | |||||| || || || || | ||| ||| |||| | | ||| | Sbjct 15512 GGC-GTAGTCCCAGTCACGGGGGTAAGCGGAAC---CACCGCAGATGACCATACGAGGCT 15567 Query 127334 TGAATAGATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCA 127393 |||| || | ||| ||| || | | |||| || | || || || || | Sbjct 15568 TGAAGAGGTCGGCGTTCTTCTTGAGCTCATCGTAGTTGATGTAGCCGGTGGCGGGGTCGA 15627 Query 127394 CCTTGTACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA------------CGTTGC 127441 | ||||| || | | ||| ||| || | || || | || || Sbjct 15628 CGTTGTAGGGGAACGACTGGAAGTAGATCGAGGAGGCCGAGATCTTCTTCTTGGCGGTGT 15687 Query 127442 GGAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCG 127501 | | ||||| |||| ||| || ||| ||||| |||| |||||||| | | || | Sbjct 15688 AGTAACCGTGGGTCAAGTGACCACCGGAGGGCAAGCCGAGACCCATGATACGGTCCTGGG 15747 Query 127502 GTTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACAC 127561 | | || || | ||| | |||||||||||| | || || ||||| || || || Sbjct 15748 GCTGAAGGAGGGCGGTGAAGGTGGCAAAGTTGGCGGTGGAACCAGAGTAGGGCTGGACGT 15807 Query 127562 ACACTCCCCATTCGGACT--CGTTCAA-ATTGAACGCTCTGAGACATCGCTGCTGTGCTA 127618 || ||||| | || | |||| ||||| || |||| |||||||| | Sbjct 15808 TGACGCCCCA---GACCTTGGGGTCAAGGTTGAAAGCCTTGAGGGCACGCTGCTGGCAGA 15864 Query 127619 GCAGTTCGATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCT 127678 ||| |||| | ||||| ||||||||||||| |||||||| ||||| ||||| Sbjct 15865 GCACCTCGAGCTGGTCGATGTACTCGTTACCACCGTAGTATCGGGCACCGGGAAGACCCT 15924 Query 127679 CCGAGTACTTGTTGATGAG 127697 | |||||||||||| |||| Sbjct 15925 CAGAGTACTTGTTGGTGAG 15943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740916434945120