Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq18 96.9 3e-15 seq27 95.1 1e-14 >seq18 Length=238221 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/210 (71%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| || |||||| || |||||||| || | || || || ||||||| ||||| Sbjct 226395 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA-AAGGGTACGGCCGTCCTCGAGCTG 226453 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||||||| || | || | |||||||| || || | | ||||||||| || || Sbjct 226454 CTTACCGGCGAAGATAAGTCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGGATCTT 226513 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 ||||| | | || ||||| || | ||||||| ||||| || ||||| ||||| Sbjct 226514 GGCCTTGACGTTGTCG--ATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTACCC 226571 Query 48701 GTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||||| || || ||||| ||||||||| || Sbjct 226572 GTGAGGGTCTTAACAAAGATCTGCATCTTG 226601 >seq27 Length=198227 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 48530 GTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCG 48589 ||||||||||| ||||||||||| || | || || ||||||||| ||||||||| Sbjct 160829 GTGCTCTCCTTCTGAATGTTGTAGTCCGACAGGGTACGACCGTCCTCCAACTGCTTACCA 160770 Query 48590 CCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTG 48649 | | || ||||||||||| || || | || ||||||||| || || |||| Sbjct 160769 GCAAAGATCAAACGCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTTG 160710 Query 48650 ATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTT 48709 | | | |||||||| | ||||| ||| | || ||||| || || ||||| || Sbjct 160709 ACATTGTCAATGGTATCCGACGACTCGACCTCCAAAGTGATGGTCTTTCCCGTGAGCGTC 160650 Query 48710 TTCACAAAAATCTGCAT 48726 || ||||| || ||||| Sbjct 160649 TTGACAAAGATTTGCAT 160633 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||| | | ||||| | || | ||||||||||| ||||||||||| || | Sbjct 160632 ACCACCGCGGAGTCGCAACACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGA 160573 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || || || | ||||| |||||||||||| | | || | |||||||| || | Sbjct 160572 -AAGAGTACGGCCATCCTCGAGCTGCTTACCGGCAAAGATGAGTCGCTGCTGGTCAGGTG 160514 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTC 48675 | | || |||||||||| |||||| ||| | | | || || || || | ||||| Sbjct 160513 GGATACCTTCCTTGTCCTGGATTTTCGCCTTTACGTTGTCG--ATCGTGTCCGAGGACTC 160456 Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || || ||||| ||||| || ||||| |||||||| Sbjct 160455 AACCTCGAGAGTGATCGTCTTTCCGGTCAGAGTCTTGACAAAGATCTGCAT 160405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421172074807412