Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq141 141 1e-28 >seq141 Length=34748 Score = 141 bits (156), Expect = 1e-28 Identities = 471/729 (65%), Gaps = 8/729 (1%) Strand=Plus/Minus Query 63135 CGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAAC 63194 || ||||||||||| || | | | | | || || || || | || ||||| | Sbjct 30289 CGCTCGAACTCGTCGCCGTAGCAGTCGGCGAGACCGGGGCACTCGTTGGGGCACATGAGG 30230 Query 63195 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63254 ||||| || |||| | || || || ||||| |||||||| |||| ||| || || Sbjct 30229 GACCAGTCACCGTTCTGCTCGACACGCTTCATGAAGAGATCGGGAACCCAGAGGGCGTAG 30170 Query 63255 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63314 || || || | | | | ||||| || || ||||| || ||||||||| | Sbjct 30169 AAGAGCTCACGAGCACGAACCTCCTCCTTACCGTGGTTCTTGCGGAGGTCGAGGAACTCA 30110 Query 63315 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63374 | | || || ||||| || || | ||| ||||| | | || || || ||||| || Sbjct 30109 AAGACGTCCGAGTGCCATGGCTCAATGTAGATGGCAAAGGCACCGGGACGCTTGTTGCCA 30050 Query 63375 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63434 ||||| || | ||| | |||||||| || | || | | ||| |||| |||||||| Sbjct 30049 CCCTGGTCGACGTAGCGGGCGGTGTTGTTGAAGACGCGGAGCATGGGAACGATACCGTTG 29990 Query 63435 GATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT-AG 63493 | ||| ||||| |||| || ||| ||| || |||| || | | || | || Sbjct 29989 CTAACACCGTTGGTGCCGGCAATGTAGGAGCCAGTGCCACGGATGC-AGTGGATGTTGAG 29931 Query 63494 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACC 63553 ||| || || || || | || ||||| | ||||| || | |||||| ||||| || Sbjct 29930 ACCGATACCACCGGCGGTCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGATGCC 29871 Query 63554 CTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63613 || ||| || || ||||| | | || ||||| || | || | || || Sbjct 29870 GTCGATGGAGTCGTCCTTCATGGTGACGAGGAAACACGACGAGAGCTGCGGGTGAGGGGT 29811 Query 63614 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63673 || || || || | ||| || || ||||| ||||| | |||| || | || ||||| Sbjct 29810 ACCGGCGTTGAAGAGGGTGGGCGAGGCGTGGGTAAAGTACTTTTGCGACATGAGGTTGTA 29751 Query 63674 CGTCTCAATAGCTGAGTCTATATCCCATTGA---TGAATTCCTACTGCGACACGCATTAA 63730 ||||| || || | | || ||| ||| || || || || ||||||||||| | Sbjct 29750 GGTCTCGATGGCGCTGGCGATGTCC---TGACCGTGGATACCGACGGCGACACGCATGAG 29694 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 ||||||||| || | || ||| |||| ||| || | | |||||| || | Sbjct 29693 CATGTGCTGGGGACGCTCTGCGACCTTGCCGTTGATGCGGAGGAGGTAGGAGCGCTCGAG 29634 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63850 || || || || || ||||||| ||||| || ||||| || || |||||| ||| Sbjct 29633 GGTCTTGAAGCCGAAGAAGTTGTAGTGGAAGTCACGCTCGTAGATGATGGCCGAGTCGAG 29574 Query 63851 TTTATCCTT 63859 | ||||| Sbjct 29573 CTGGTCCTT 29565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622827189221920