Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq141 286 9e-72 >seq141 Length=34748 Score = 286 bits (316), Expect = 9e-72 Identities = 1159/1797 (64%), Gaps = 48/1797 (3%) Strand=Plus/Plus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAA 363450 ||||| | ||||| | ||| |||||||| || ||||| || | | | || Sbjct 29619 TTCGGCTTCAAGACCCTCGAGCGCTCCTACCTCCTCCGCATCAACGGCAAGGTCGCAGAG 29678 Query 363451 CGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCC 363510 || || ||||| ||| | |||||||| || | |||||||| | | ||| | | | Sbjct 29679 CGTCCCCAGCACATGCTCATGCGTGTCGCCGTCGGTATCCACGGTCAGGACATCGCCAGC 29738 Query 363511 GCGATTGAAACATATAAGCTTCTAAGT-GCTCGTGTA-TTCACGCACGCCACGCCAACAA 363568 || || || || || || || | || || ||| || || |||||| |||| || Sbjct 29739 GCCATCGAGACCTACAACCTCAT--GTCGCAAAAGTACTTTACCCACGCCTCGCCCACCC 29796 Query 363569 TGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGG 363628 | | ||| || || || | | | || ||| | || || || || || | | ||||||| Sbjct 29797 TCTTCAACGCCGGTACCCCTCACCCGCAGCTCTCGTCGTGTTTCCTCGTCACCATGAAGG 29856 Query 363629 ACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATG 363688 |||| |||||||| || |||| ||||| || |||| || || | || ||||||| | Sbjct 29857 ACGACTCCATCGACGGCATCTACGACACGCTCAAGACCTGCGCCATGATCTCCAAGACCG 29916 Query 363689 CAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG-CACAGAACAGTTACATTCGCGGC 363747 | || || || ||| | |||||| | |||| ||| | | |||||| |||| Sbjct 29917 CCGGTGGTATCGGTCTCAACATCCACTGCATCCGTGGCACTGG-CTCCTACATTGCCGGC 29975 Query 363748 AC--AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGA 363805 || | || | || || || | ||||||||||| || || || |||| || || Sbjct 29976 ACCAACGGTGTTAGC--AACGGTATCGTTCCCATGCTCCGCGTCTTCAACAACACCGCCC 30033 Query 363806 GGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTC 363865 | ||||||||||||||||| ||||| || || ||||| || || | ||||| Sbjct 30034 GCTACGTCGACCAGGGTGGCAACAAGCGTCCCGGTGCCTTTGCCATCTACATTGAGCCAT 30093 Query 363866 ATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGC 363925 || | || | |||||||| || || ||||| || ||| || || ||||| | | Sbjct 30094 GGCACTCGGACGTCTTTGAGTTCCTCGACCTCCGCAAGAACCACGGTAAGGAGGAGGTTC 30153 Query 363926 GTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGG 363985 |||| ||||| || ||||| || || |||||| | || | || |||||||| || || | Sbjct 30154 GTGCTCGTGAGCTCTTCTACGCCCTCTGGGTTCCCGATCTCTTCATGAAGCGTGTCGA-G 30212 Query 363986 CAGGTAAG-AATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGG 364044 ||| | | ||||| ||| | ||||| |||| || || ||||| |||| | Sbjct 30213 CAGAACGGTGACTGGTCCCTCATGTGCCCCAACGAGTGCCCCGGTCTCGCCGACTGCTAC 30272 Query 364045 GGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAG--- 364101 || ||||| | | ||| ||||| || || | ||||| || ||| Sbjct 30273 GGCGACGAGTTCGAGCGTCTCTACGAGCGCTACGAGGCCGAGGGCCGTGC---CAAGCGC 30329 Query 364102 ACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACA 364161 || | || |||||||| |||| |||||| | || || |||| ||||| || | Sbjct 30330 ACTGTCAAGGCTCAGAAGCTCTGGTACGCCATCCTCGAGTCCCAGACCGAGACTGGTAAC 30389 Query 364162 CCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACA 364221 |||| || | ||||| || | |||||||||| ||||||| || |||| || || Sbjct 30390 CCCTTCATCCTCTACAAGGACGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGGCACC 30449 Query 364222 ATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCC 364281 || || |||| | || |||||||| || || |||| || ||||||||| ||| Sbjct 30450 ATCAAGTGCTCCAACTTGTGCACCGAGATCATCGAGTACAGTGCCCCCGACGAGGTCGCC 30509 Query 364282 GTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATG------GTACTTTT 364335 || || ||| | || || ||||| || || | || | | | || | Sbjct 30510 GTCTGCAACTTGGCTTCCATCGCCCTCCCCACCTTCATCGACCCCGTCACCAAGACCTAC 30569 Query 364336 GACCACCAGCATCTTTATGACGTAACCTA--TCATGCTACTTGCAATCTCGACAAGGTTA 364393 ||| | ||| ||| | || || || | ||| || | | || ||| ||||| | | Sbjct 30570 GACTTCAAGCGTCTCCACGAGGTCGCCAAGGCCAT-CTGCAAG-AACCTCAACAAGATCA 30627 Query 364394 TCGACAAGAATTATTATCCAATTCCTGAAGCCGAGC-GTTCTAATATGCGTCATCGCCCG 364452 |||||| || || || || || | || | || | || || ||||| ||||| || Sbjct 30628 TCGACATCAACTACTA-CCCCGTCGAGGAGGCTCGCAGGTCCAACATGCGCCATCGTCCC 30686 Query 364453 ATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGAT 364512 || ||| | ||||| ||||| ||||| |||| || ||||| | || || || Sbjct 30687 ATCGGTATCGGTGTCCAGGGTCTCGCCGACGCCTTCATGATCATGGGCTACGCTTTCGAG 30746 Query 364513 TCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAAT- 364571 ||||| || |||||| ||| || ||||||| || || || || ||||| | Sbjct 30747 TCGCCCGAGGCTCGTCGTCTCAACGTCCAGATCTTCGAGACCATCTACCACGCCGCCCTC 30806 Query 364572 GACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCC 364631 || | ||||| || |||| | | || | ||| || || | || || || Sbjct 30807 GAGCG-ATCGTGCGAGCTGGCTCAGGAGCACGGCACCTACGAGACCTACGCCGGCTCGCC 30865 Query 364632 TCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAA 364691 ||| ||||| | |||||| || | ||| |||||| || || || ||| | Sbjct 30866 CGCTTCCCAGGGTGAGCTCCAGTACGACATGTGGGGTGTCACCCCCTCGAACCTTTGGGA 30925 Query 364692 CTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGC 364751 ||||| ||| |||| | ||||| ||| ||||||||| ||| | || Sbjct 30926 CTGGGCCGAGCTCAAGGCCAAGATCGCCAAGCACGGTCTTCGCAACTCGCTCCTCCTCGC 30985 Query 364752 GCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTT 364811 |||||||| || || || || |||||||| || ||||||||||||||| || | Sbjct 30986 TCCCATGCCTACTGCCTCCACCAGTCAGATCCTGGGCTTCAACGAGTGCTTCGAGCCTTA 31045 Query 364812 TACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTA 364871 || |||| | || || || || || || |||| || || | ||| || || | Sbjct 31046 CACCTCCAATATCTACTCGCGTCGTGTGCTCGCCGGTGAGTTCCAGGTCGTCAACCCCTG 31105 Query 364872 CCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCAT 364931 | || || || ||| | || |||||| |||| |||||||||| ||||| Sbjct 31106 GTTGCTCCGCGAGCTCGTCGAGCAGGGTCTGTGGAACGACACCATGAAGAACCGCATCAT 31165 Query 364932 CGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGA--AGATC-TGAAGCCTAT 364988 |||| |||||| | |||||| | || || | || || ||| ||||| | Sbjct 31166 CGCCCACGGTGGTTCCATCCAGAACGTGCCCGGCATCCCCGACCGCATCAAGAAGC---T 31222 Query 364989 TTACAAAACCGTATGGGAAAT-TTCCATGCGAA--CTCTCATTGATATGGCGGCCGATCG 365045 ||||| ||||| ||||| || ||| ||| | ||||||| ||||| ||||| || Sbjct 31223 GTACAAGACCGTCTGGGAGATCAGCCA---GAAGGCCATCATTGACATGGCTGCCGACCG 31279 Query 365046 CGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAG--CCAACCTCC 365103 |||||||| ||||| ||| |||||| | ||| || || || | || |||| Sbjct 31280 TGGTGCTTTCATCTGCCAGTCGCAGTCGCTCAAC--ATCCACCTTTCGGCACCCACCTTT 31337 Query 365104 GCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGGTGCC 365160 | |||| || || ||||| |||||||| ||||| ||||| ||||| ||| || Sbjct 31338 GGTCAGCTCACCTCGATGCACTTCTACGGATGGAAGAAGGGTCTCAAGACCGGTACC 31394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303096231652184