Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq141 188 7e-43 seq75 132 5e-26 seq18 123 2e-23 seq25 116 3e-21 seq27 109 5e-19 >seq141 Length=34748 Score = 188 bits (208), Expect = 7e-43 Identities = 577/875 (66%), Gaps = 19/875 (2%) Strand=Plus/Minus Query 145621 GACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGAT 145680 || |||||| || ||||| || || || || ||| |||| | | ||||| | | ||| Sbjct 30536 GAGGGCGATGGAAGCCAAGTTGCAGACGGCGACCTCGTCGGGGGCACTGTACTCGATGAT 30477 Query 145681 CTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTT 145740 ||||| |||||| ||| || |||||||| || || || | ||| || || || | ||| Sbjct 30476 CTCGGTGCACAAGTTGGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTT 30417 Query 145741 GCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAA 145800 | |||||||||||||| ||| | || |||||||| ||| | ||| | ||| Sbjct 30416 GGCAGCGTCCTTGTAGAGGATGAAGGGGTTACCAGTCTCGGTCTGGGACTCGAGGATGG- 30358 Query 145801 ACGGTGCA-AG-TCCTGCGCACGCACC-TGCTGCTGGTAGCGGCCCTCTTCTTCGTATTT 145857 || || || | ||| || || ||| ||| | |||||||| | ||||| Sbjct 30357 -CGTACCAGAGCTTCTGAGCCTTGACAGTGCGCTTGGCA-CGGCCCTCGGCCTCGTAGCG 30300 Query 145858 CCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGG 145917 | |||||| ||| ||| || |||||||| |||| || ||||| |||| |||||| Sbjct 30299 CTCGTAGAGACGCTCGAACTCGTCGCCGTAGCAGTCGGCGAGACCGGGGCACTCGTTGGG 30240 Query 145918 ACACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCA 145977 ||||| || ||||| | ||||| | ||| |||| ||| || | ||| || ||||| Sbjct 30239 GCACATGAGGGACCAGTCACCGTTCTGCTCGACACGCTTCATGAAGAGATCGGGAACCCA 30180 Query 145978 CAGCGCGTACATCAAGTCGCGCGCTTTGCAATCCTCAGCACCCATGTT-TCGCTTCAAAT 146036 || ||||| | | || || || ||||| ||| ||| | || | | Sbjct 30179 GAGGGCGTAGAAGAGCTCACGAGCACGAACCTCCTCCTTACCGTGGTTCTTGCGG-AGGT 30121 Query 146037 TAAGCACACT-ATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTT 146095 || | ||| | ||| ||||| |||||| || ||||| |||| ||| | ||| || Sbjct 30120 CGAGGA-ACTCAAAGACGTCCGAGTGCCATGGCTCAATGTAGATGGCAAAGGCACCGGGA 30062 Query 146096 CGTTTG---CCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGC 146152 || ||| ||||||||||| |||| || | ||||||| |||||||| | |||||| Sbjct 30061 CGCTTGTTGCCACCCTGGTCGACGTAGCGGGCGGTGTTGTTGAAGACGCGGAGCATGGGA 30002 Query 146153 TCGACGCCGCTGGCTACGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAA 146212 ||| ||| || || ||||| || | || || ||| | || | ||| Sbjct 30001 ACGATACCGTTGCTAACACCGTTGGTGCCGGCAATGTAGGAGCCAGTGCCACGGATGCAG 29942 Query 146213 TGAACATTCACGCCGAGACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTC 146272 || | || | |||| ||| ||| || |||||| || ||||||| |||||| Sbjct 29941 TGGATGTTGAGACCGATACCACCGGCGGTCTTGGAGATCATGGCGCAGGTCTTGAGCGTG 29882 Query 146273 TCGTAGATGCCGTCAATGCTATCG--CTTCGAATGCCGAGCAGAAAGCACGAGCACATCT 146330 |||||||||||||| ||| ||| |||| ||| || || || ||||| | | || Sbjct 29881 TCGTAGATGCCGTCGATGGAGTCGTCCTTC--ATGGTGACGAGGAAACACGACGAGAGCT 29824 Query 146331 GCGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGC 146390 ||| || || || || ||| | || || ||||| ||||| ||| | Sbjct 29823 GCGGGTGAGGGGTACCGGCGTTGAAGAGGGTGGGCGAGGCGTGGGTAAAGTACTTTTGCG 29764 Query 146391 TCATCATCCGATACGTTTCGATAGCGTCTTG-AATGTCGTCGCCATGAATGCCCAAAGCG 146449 ||| | || || ||||| ||| || | ||||| | || || || || | ||| Sbjct 29763 ACATGAGGTTGTAGGTCTCGATGGCG-CTGGCGATGTCCTGACCGTGGATACCGACGGCG 29705 Query 146450 ACGCGCATGAGCATGTGTTGGGGCCGCTCCGCCAC 146484 || |||||||||||||| ||||| ||||| || || Sbjct 29704 ACACGCATGAGCATGTGCTGGGGACGCTCTGCGAC 29670 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||||||| ||||| ||||| | |||||||||| | || | || || ||| | || Sbjct 31099 TTGACGACCTGGAACTCACCGGCGAGCACACGACGCGAGTAGATATTGGAGGTGTAAGGC 31040 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || ||||||| ||||||||| ||| ||| | || || |||||| || | Sbjct 31039 TCGAAGCACTCGTTGAAGCCCAGGATCTGACTGGTGGAGGCAGTAGGCATGGGAGCGAGG 30980 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || ||||| || |||||||| ||| | |||| ||| |||| ||||| Sbjct 30979 AGGAGCGAGTTGCGAAGACCGTGCTTGGCGATCTTGGCCTTGAGCTCGGCCCAGTCCCAA 30920 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTG 145272 || | || | || |||||||||||||||| Sbjct 30919 AGGTTCGAGGGGGTGACACCCCACATGTCGTACTG 30885 >seq75 Length=98333 Score = 132 bits (146), Expect = 5e-26 Identities = 295/440 (67%), Gaps = 11/440 (3%) Strand=Plus/Plus Query 46145 CTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTT 46204 |||||||||||||| | || ||||| || ||| ||||| |||| || || || | Sbjct 64365 CTTTCGCCGAGCGTCTCGTTGCCTTCGCCGCTGTCGAGGGTATCTTCTTCTCCGGTTCCT 64424 Query 46205 TTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAAC 46263 | ||| ||||||| | |||| || | || | |||||||||| || || || |||| Sbjct 64425 TCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTC-TCATGCCCGGTCTCACTTTCTCCAAC 64483 Query 46264 GAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACT 46323 ||||| || ||||| ||||| || ||||| || |||||||| || ||| || | Sbjct 64484 GAGCTCATCTCGCGTGACGAAGGTCTGCACACCGACTTTGCCTGCCTCCTCTTCA----- 64538 Query 46324 CGCGTGCACGACAAGCTTGCG---CCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTG 46380 || | | | |||| ||| || ||||||||||| | || ||| ||||| ||| Sbjct 64539 -GCCACCTCAAGAAGCGAGCGCACCCGGACACCGTGCTCAAAATCATCACCGAGGCCGTG 64597 Query 46381 GCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCA 46440 | || ||||| | || | || | ||| || |||| | || | ||||||||| | Sbjct 64598 GAAATCGAGAAAGCTTTCCTCACCGACGCTCTCCCCGTATCTTTGATTGGCATGAACTCG 64657 Query 46441 CAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAG 46500 | | |||||| | ||||| |||| || || ||||| ||||| || |||| | Sbjct 64658 AAATTGATGTGCCAGTACATAGAGTACGTGGCTGACCGTCTGCTTGTTTCGCTTGGAAAC 64717 Query 46501 CCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGC 46560 ||| |||| ||| |||| || ||||| || ||| | ||||| || | || Sbjct 64718 CCGGTCCATTACGGCGCCAGCAACCCCTTTGACTTCATGGAAAACATAAGTCTTCAAGGA 64777 Query 46561 AAAACTAATTTTTTCGAAAA 46580 || || || || ||||| || Sbjct 64778 AAGACCAACTTCTTCGAGAA 64797 >seq18 Length=238221 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||| || || | ||| | ||||| ||||| || |||||||| || Sbjct 147520 GCCACCACGCAGACGGAGGACGAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCAGA 147461 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || |||||| ||||||||||| || |||| | ||||||||| || || || Sbjct 147460 GAGTGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCGGGTGG 147401 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| ||| || ||||| | || | || || | |||||||| Sbjct 147400 GATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGAC 147341 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | || || ||||| | ||| || ||||| |||||||| Sbjct 147340 CTCGAGGGTGATCGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 147293 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || ||||| | || | |||||||||||| || |||||||| || Sbjct 226371 CCACCACGCAGGCGGAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 226430 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| |||||||| || ||| |||| | ||||||||||| || || Sbjct 226431 AGGGTACGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCAGGGGGA 226490 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||||| | || | || || | ||||| | Sbjct 226491 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACC 226550 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| ||||| || || || || || || |||||||| Sbjct 226551 TCGAGGGTGATGGTCTTACCCGTGAGGGTCTTAACAAAGATCTGCAT 226597 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || ||||| | || | ||||||||||| || |||||||| || Sbjct 147291 CCACCACGCAGGCGGAGCACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 147232 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| ||||||||||| || |||| | ||||||||||| || ||| Sbjct 147231 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCAGGTGGG 147172 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || || || ||||| | || | || || | ||||| | Sbjct 147171 ATGCCCTCCTTATCTTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACC 147112 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| || || || ||||| |||||||| Sbjct 147111 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 147065 >seq25 Length=198755 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | |||||||||||| || |||||||| ||| Sbjct 152319 CCACCACGAAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAA 152260 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || ||| |||| | ||||||||||| || ||| Sbjct 152259 AGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 152200 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | ||||||| Sbjct 152199 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCCGAAGACTCGACC 152140 Query 131188 TCGACGGTAACGGTTTTACCGGTT 131211 |||| ||| | ||| ||||| ||| Sbjct 152139 TCGAGGGTGATGGTCTTACCTGTT 152116 >seq27 Length=198227 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | ||| |||||||| || |||||||| || Sbjct 160175 CCACCACGGAGACGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 160116 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || | ||| || || || |||| | |||||||||||| || ||| Sbjct 160115 AGGGTTCGTCCATCTTCCAACTGTTTACCGGCAAAGATGAGACGCTGCTGGTCGGGCGGG 160056 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | || |||| |||||||| Sbjct 160055 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACC 159996 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | ||| || ||||| || || || ||||| ||||||||| Sbjct 159995 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 159948 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | |||| ||| | || | ||| |||||| ||||||||||| ||| Sbjct 160631 CCACCGCGGAGTCGCAACACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAA 160572 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| |||||||| || || |||| | ||||||||||| || ||| Sbjct 160571 AGAGTACGGCCATCCTCGAGCTGCTTACCGGCAAAGATGAGTCGCTGCTGGTCAGGTGGG 160512 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||||||| ||| | | || | || || | |||||| | Sbjct 160511 ATACCTTCCTTGTCCTGGATTTTCGCCTTTACGTTGTCGATCGTGTCCGAGGACTCAACC 160452 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | || || ||||| ||||| || || || |||||||| Sbjct 160451 TCGAGAGTGATCGTCTTTCCGGTCAGAGTCTTGACAAAGATCTGCAT 160405 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 131043 CTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTA 131102 |||||| ||||||||||| || || ||| || |||||| | |||||| || || | Sbjct 160824 CTCCTTCTGAATGTTGTAGTCCGACAGGGTACGACCGTCCTCCAACTGCTTACCAGCAAA 160765 Query 131103 GATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162 ||| |||||||||||||| || ||||| || || ||||| ||| || ||||| | Sbjct 160764 GATCAAACGCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATT 160705 Query 131163 CTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 || | ||||| | ||||||| || | || | ||| || || || || || || || Sbjct 160704 GTCAATGGTATCCGACGACTCGACCTCCAAAGTGATGGTCTTTCCCGTGAGCGTCTTGAC 160645 Query 131223 GAAAATCTGCAT 131234 || || ||||| Sbjct 160644 AAAGATTTGCAT 160633 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || || ||||| ||||||||||| ||| | |||||| ||||| || ||||| ||| Sbjct 160373 GTGGATTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGTTGCTTTCCT 160314 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| | || | ||| |||||||| || || || || || ||||| ||| || |||| Sbjct 160313 GCGAAAATGAGACGTTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTG 160254 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || || | ||| || | |||| || | ||| || ||||| | || Sbjct 160253 ACGTTGTCGATGGTGTCCGAGGATTCAACTTCGAGAGTGATGGTCTTGCCGGTCAAGGTC 160194 Query 131218 TTTACGAAAATCTGCAT 131234 || || || |||||||| Sbjct 160193 TTGACAAAGATCTGCAT 160177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471921866734080