Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq141 136 5e-27 >seq141 Length=34748 Score = 136 bits (150), Expect = 5e-27 Identities = 470/729 (64%), Gaps = 8/729 (1%) Strand=Plus/Minus Query 62990 CGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAAC 63049 || ||||||||||| || | | | | || || || || || | || ||||| | Sbjct 30289 CGCTCGAACTCGTCGCCGTAGCAGTCGGCGAGACCGGGGCACTCGTTGGGGCACATGAGG 30230 Query 63050 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63109 ||||| || |||| | || || || ||||| |||||||| |||| ||| || || Sbjct 30229 GACCAGTCACCGTTCTGCTCGACACGCTTCATGAAGAGATCGGGAACCCAGAGGGCGTAG 30170 Query 63110 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63169 || || || | | | | ||||| || || ||||| || ||||||||| | Sbjct 30169 AAGAGCTCACGAGCACGAACCTCCTCCTTACCGTGGTTCTTGCGGAGGTCGAGGAACTCA 30110 Query 63170 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63229 | | || || ||||| || || | ||| ||||| | | || || || ||||| || Sbjct 30109 AAGACGTCCGAGTGCCATGGCTCAATGTAGATGGCAAAGGCACCGGGACGCTTGTTGCCA 30050 Query 63230 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 63289 ||||| || | ||| | |||||||| || | || | | ||| |||| ||||| ||| Sbjct 30049 CCCTGGTCGACGTAGCGGGCGGTGTTGTTGAAGACGCGGAGCATGGGAACGATACCGTTG 29990 Query 63290 GATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT-AG 63348 ||| ||||| || | || ||| ||| || |||| || | | || | || Sbjct 29989 CTAACACCGTTGGTGCCGGCAATGTAGGAGCCAGTGCCACGGATGC-AGTGGATGTTGAG 29931 Query 63349 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 63408 ||| || || || || | || ||||| | ||||| || | ||| || |||||||| Sbjct 29930 ACCGATACCACCGGCGGTCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGATGCC 29871 Query 63409 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63468 || || || ||| ||||| | | || ||||| || | || | || || Sbjct 29870 GTCGATGGAGTCGTCCTTCATGGTGACGAGGAAACACGACGAGAGCTGCGGGTGAGGGGT 29811 Query 63469 TCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTA 63528 || || || || | ||| || || ||||| ||||| | |||| || | || ||||| Sbjct 29810 ACCGGCGTTGAAGAGGGTGGGCGAGGCGTGGGTAAAGTACTTTTGCGACATGAGGTTGTA 29751 Query 63529 CGTCTCAATAGCTGAGTCTATATCCCATTGA---TGAATTCCTACTGCGACACGCATTAA 63585 ||||| || || | | || ||| ||| || || || || ||||||||||| | Sbjct 29750 GGTCTCGATGGCGCTGGCGATGTCC---TGACCGTGGATACCGACGGCGACACGCATGAG 29694 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 ||||||||| || | || ||| |||| ||| || | | |||||| || | Sbjct 29693 CATGTGCTGGGGACGCTCTGCGACCTTGCCGTTGATGCGGAGGAGGTAGGAGCGCTCGAG 29634 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63705 || || || || || ||||||| ||||| || ||||| || || |||||| ||| Sbjct 29633 GGTCTTGAAGCCGAAGAAGTTGTAGTGGAAGTCACGCTCGTAGATGATGGCCGAGTCGAG 29574 Query 63706 TTTATCCTT 63714 | ||||| Sbjct 29573 CTGGTCCTT 29565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633509930795200