Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq27 111 1e-19 seq18 98.7 9e-16 >seq27 Length=198227 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| ||||||| || | ||||| |||| || ||||| || Sbjct 160405 ATGCAGATCTTTGTCAAGACTCTGACCGGAAAGACGATCACTCTCGAGGTTGAGTCCTCG 160464 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| |||||| ||||| ||||| || ||||||||||| Sbjct 160465 GACACGATCGACAACGTAAAGGCGAAAATCCAGGACAAGGAAGGTATCCCACCTGACCAG 160524 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || |||||||| || || | || |||| || ||| | ||| ||||| Sbjct 160525 CAGCGACTCATCTTTGCCGGTAAGCAGCTCGAGGATGGCCGTACTCTTTCCGACTACAAC 160584 Query 25179 ATTCAAAAAGA 25189 ||||| || || Sbjct 160585 ATTCAGAAGGA 160595 >seq18 Length=238221 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| || | ||||| |||| || ||||| || Sbjct 147293 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACGATCACCCTCGAGGTCGAGTCCTCG 147352 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| ||||| || ||||| || || Sbjct 147353 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCACCCGATCAG 147412 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || || | || || | || ||||| Sbjct 147413 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACACTCTCTGACTACAAC 147472 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| ||||| ||| | || || Sbjct 147473 ATCCAGAAGGAATCGACGCTTCATCTCGTCCT 147504 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/227 (70%), Gaps = 10/227 (4%) Strand=Plus/Plus Query 24989 AAACGGAACA-ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAG 25047 ||||| |||| ||||| || || || ||||| | ||||| || ||||||| | || | Sbjct 147055 AAACG-AACAGATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGG 147113 Query 25048 TGGAGTCGTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGG 25103 ||||||| || ||||| ||||| |||| | || || | ||| || || || || Sbjct 147114 TGGAGTCTTCGGACACCATCGACAACGTCA---AGGCCAAGATTCAA-GATAAGGAGGGC 147169 Query 25104 ATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACT 25163 || ||||||||||| ||||| |||| ||||||||||| || | || || | || || Sbjct 147170 ATCCCACCTGACCAGCAGCGACTTATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACC 147229 Query 25164 GTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || ||||| || || || || || || || || | ||||| Sbjct 147230 CTTTCGGACTACAACATCCAGAAGGAGTCGACTCTTCACCTCGTGCT 147276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433246606376780