Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq75 201 1e-46 >seq75 Length=98333 Score = 201 bits (222), Expect = 1e-46 Identities = 484/726 (67%), Gaps = 11/726 (2%) Strand=Plus/Minus Query 92927 TCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTACA 92986 ||||| || | ||||||||||| ||||||| | | ||||| || | | | ||| Sbjct 64692 TCAGCCACGTACTCTATGTACTGGCACATCAATTTCGAGTTCATGCCAATCAAAGATACG 64633 Query 92987 GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTATT 93046 || ||||||||||| | |||| ||||||||||| | ||||| || | | ||||| | Sbjct 64632 GGGAGAGCGTCGGTGAGGAAAGCTTTCTCGATTTCCACGGCCTCGGTGATGATTTTGAGC 64573 Query 93047 AC--TCTACTATTTGG-TGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCG 93103 || | | | | | | | || | | | | || | | | ||| ||||||||| Sbjct 64572 ACGGTGTCCGGGTGCGCTCGCTTCTTGAGG---TGGCTGAAGAGGAGGCAGGCAAAGTCG 64516 Query 93104 GTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGT 93163 || || | ||||||||| || || || | ||| ||| ||| || | ||| || | || Sbjct 64515 GTGTGCAGACCTTCGTCACGCGAGATGAGCTCGTTGGAGAAAGTGAGACCGGGCATGAGA 64456 Query 93164 CCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACG 93223 || || ||||||||||| || || || || || ||| || || || ||||| || || Sbjct 64455 CCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAACCGGAGAAGAAGATACCCTCGACA 64396 Query 93224 GCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAA 93283 || || || || || | ||| ||||| ||| ||| || |||||||||| | | Sbjct 64395 GCGGCGAAGGCAACGAGACGCTCGGCGAAAGAGGCGCGCTTGTCGCTGATCCATCGGAGA 64336 Query 93284 GCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCT 93343 ||||| || || || | ||| | || | || |||| |||| ||| ||| | || Sbjct 64335 GCCCAGTCAGCCTTCTGCTTGACGACGGGGATGGTCTCGACGGCGTCAAAGAGGAACTCG 64276 Query 93344 CGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACA 93403 |||| || | || || ||||| || ||||| | || || || | || || |||| Sbjct 64275 CGCTGCTCGGGCTCACGGATGTAGGTGTCGATGAGGAGCGAGTAGGTCTCCGAGTGGATG 64216 Query 93404 TTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGA 93463 |||||||| || ||||| |||||||| || | || || | | ||| ||||| || Sbjct 64215 TTCTCCATCATGATCTGGAAACCGTAGAAGCAACGGGCCTCGGCGGCCTGAACTTC-AGA 64157 Query 93464 G-AAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAA 93522 | || | ||| || || || || ||||| ||||| ||||| || || || || || | Sbjct 64156 GCTGAAACGCTCGACAAGGTTCTCGTTGACGATACCGTCGGAGGCGGCGAAGAAGGCGAG 64097 Query 93523 TATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC---TTATCCCAATCGGATAGATC 93579 | || || || || ||| | || || ||| || ||||| ||| ||||| Sbjct 64096 GACGTGGGAGATGAAGTGACGCTCGTTGTCGTTGAGCTTGTTGTCCCAGTCGTGGAGATC 64037 Query 93580 TTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATC 93639 || || || |||| ||| ||| | ||||| || || || || || || |||||||| | Sbjct 64036 CTTGGAGAGGTCGATTTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATTTG 63977 Query 93640 CCATAT 93645 ||| || Sbjct 63976 CCAGAT 63971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556753520766880