Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq27 141 8e-29 seq18 122 7e-23 seq3372 95.1 1e-14 seq25 93.3 4e-14 >seq27 Length=198227 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || ||||| || || ||||||| ||||| ||| || | Sbjct 160177 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACTCTCGAAGTTGAATCCTCG 160236 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || || ||||||||||| ||||| || || || Sbjct 160237 GACACCATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAG 160296 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || || || || | |||||| ||||||| | ||||| |||||| Sbjct 160297 CAACGTCTCATTTTCGCAGGAAAGCAACTCGAGGATGGCCGCACCCTTTCCGACTACAAC 160356 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || |||||||| | || | || |||||| | || || ||| Sbjct 160357 ATTCAGAAGGAATCCACTCTCCACCTTGTCTTGCGACTTCGTGGTGGT 160404 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | ||||| || ||| ||||||| || || || || | Sbjct 160405 ATGCAGATCTTTGTCAAGACTCTGACCGGAAAGACGATCACTCTCGAGGTTGAGTCCTCG 160464 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || ||||| || |||||||| ||||| ||||| || || Sbjct 160465 GACACGATCGACAACGTAAAGGCGAAAATCCAGGACAAGGAAGGTATCCCACCTGACCAG 160524 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || |||||||| || ||| | |||||| ||| || | ||||| |||||| Sbjct 160525 CAGCGACTCATCTTTGCCGGTAAGCAGCTCGAGGATGGCCGTACTCTTTCCGACTACAAC 160584 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || |||| | || | || |||||| | ||||| ||| Sbjct 160585 ATTCAGAAGGAGAGCACCTTGCACCTCGTGTTGCGACTCCGCGGTGGT 160632 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || || || || || Sbjct 159949 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCC 160008 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || ||||| ||||||||||| || || ||||| || Sbjct 160009 GACACCATTGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAG 160068 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || |||||||| |||||||| || ||| || ||| | || || |||||| Sbjct 160069 CAGCGTCTCATCTTTGCCGGTAAACAGTTGGAAGATGGACGAACCCTTTCGGACTACAAC 160128 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || || || |||||| | || || || Sbjct 160129 ATCCAGAAGGAGTCCACCCTCCACTTGGT 160157 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | || || || || ||||| | || || || | | Sbjct 160633 ATGCAAATCTTTGTCAAGACGCTCACGGGAAAGACCATCACTTTGGAGGTCGAGTCGTCG 160692 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || |||| || || || |||||||||||||| |||||||| || Sbjct 160693 GATACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAG 160752 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| || || ||||| ||||| || ||| | || || |||||| Sbjct 160753 CAGCGTTTGATCTTTGCTGGTAAGCAGTTGGAGGACGGTCGTACCCTGTCGGACTACAAC 160812 Query 22399 ATTCAAAAAGA 22409 ||||| || || Sbjct 160813 ATTCAGAAGGA 160823 >seq18 Length=238221 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||||| ||||| || ||| |||| || || || || || | Sbjct 147293 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACGATCACCCTCGAGGTCGAGTCCTCG 147352 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || || |||||||| || || ||||||||||| Sbjct 147353 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCACCCGATCAG 147412 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||| ||| | ||||| ||| || |||| || |||||| Sbjct 147413 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACACTCTCTGACTACAAC 147472 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || ||||| || Sbjct 147473 ATCCAGAAGGAATCGAC 147489 Score = 111 bits (122), Expect = 1e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || || || || || | ||||| || || |||| ||||| ||||| | Sbjct 147063 AGATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCTT 147122 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || ||| | ||| | |||| || |||||||| |||||||| || ||||| || | Sbjct 147123 CGGACACCATCGACAACGTCAAGGCCAAGATTCAAGATAAGGAGGGCATCCCACCTGACC 147182 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || || ||||| ||||||||||| ||| | ||||| ||| ||| | || || |||| Sbjct 147183 AGCAGCGACTTATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTTTCGGACTACA 147242 Query 22397 ACATTCAAAAAGAATCCAC 22415 |||| || || || || || Sbjct 147243 ACATCCAGAAGGAGTCGAC 147261 Score = 105 bits (116), Expect = 6e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || |||||||| || | || ||||| || |||| || || ||||| | Sbjct 226600 AAGATGCAGATCTTTGTTAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTGGAGTCT 226541 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | ||| | |||| || || || ||||||||||| ||||| || || Sbjct 226540 TCGGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGAC 226481 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || ||||| || ||||| || ||| | ||||| ||| ||| | || || ||| Sbjct 226480 CAGCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGTACCCTTTCGGACTAC 226421 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || || || || ||| Sbjct 226420 AACATCCAGAAGGAGTCGACC 226400 >seq3372 Length=309 Score = 95.1 bits (104), Expect = 1e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | ||||| || ||| |||| ||||| ||||| | || Sbjct 170 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACGATCACCCTTGAGGTGGAGTCTTCC 111 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || || || |||||||||||||| || || || || Sbjct 110 GACACAATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAG 51 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTC 22388 || ||||| || ||||| || || ||| | || || |||||| |||| Sbjct 50 CAGCGTCTCATCTTTGCTGGTAAGCAGCTTGAAGACGGCCGCACGCTCTC 1 >seq25 Length=198755 Score = 93.3 bits (102), Expect = 4e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 22242 AACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACA 22301 ||| ||||| || |||| || || || || | | || ||| | ||| || |||| Sbjct 152116 AACAGGTAAGACCATCACCCTCGAGGTCGAGTCTTCGGACACCATCGACAATGTCAAGGC 152175 Query 22302 AAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAA 22361 || || || ||||||||||| || || ||||| || || || || || || ||||| || Sbjct 152176 TAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGTAA 152235 Query 22362 ACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACA 22421 ||| | ||||| ||||||| | ||||| |||||||| || || || || ||| | || Sbjct 152236 GCAGCTCGAGGACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACCTTGCA 152295 Query 22422 TTTAGT 22427 || || Sbjct 152296 CTTGGT 152301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419649160915780