Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq75 132 1e-25 seq141 95.1 2e-14 seq3 91.5 3e-13 seq62 87.8 4e-12 >seq75 Length=98333 Score = 132 bits (146), Expect = 1e-25 Identities = 536/830 (65%), Gaps = 31/830 (4%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||| || | ||| || ||||||||||| |||||||| || Sbjct 64794 TCGAAGAAGTTGGTCTTTCCTTGAAGACTTATGTTTTCCATGAAGTCAAAGGGGTTGCTG 64735 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||| || || | ||||| | || | | ||||| ||||| |||| | Sbjct 64734 GCGCCGTAATGGACCGGGTTTCCAAGCGAAACAAGCAGACGGTCAGCCACGTACTCTATG 64675 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGA-ATTGCCTCACAGAT 251741 ||||| | ||||| || |||||||||||||||| | || | || | || || || Sbjct 64674 TACTGGCACATCAATTTCGAGTTCATGCCAATCAAA-GATACGGGGAGAGCGTCGGTGAG 64616 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 ||| | || ||| | | || ||||| | ||| ||| ||| | | | | Sbjct 64615 GAAAGCTTTCTCGATTTCCACGGCCTCGGTGATGATTTTGAGCACG-GTGTCCGGGTGCG 64557 Query 251802 CTTG-TTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGC 251860 || | |||| || | | | ||||| | |||| | ||||||||| ||||| | Sbjct 64556 CTCGCTTCTTGAGGTGGCTGAAGAGGAGGCAGGCAAAGTCGGTGTGCAGACCTTCGTCAC 64497 Query 251861 GACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGA 251920 | ||||| ||||||||| | | || || ||||| | ||||| ||| ||||||||| Sbjct 64496 GCGAGATGAGCTCGTTGGAGAAAGTGAGACCGGGCATGAGACCACGCTTCTTGAGCCAGA 64437 Query 251921 AGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGC 251980 |||| | | ||||| || ||||| | | |||||||||| | | ||||| || | Sbjct 64436 AGATGGAGGCGAAGGAACCGGAGAAGAAGATACCCTCGACAGCGGCGAAGGCAACGAGAC 64377 Query 251981 GCTCAGCAAACGA------CTTGTC-CTGCGACA-AGAACTTCTGTGCCCATGCTGCCTT 252032 |||| || || || |||||| ||| || | | | ||||| | ||||| Sbjct 64376 GCTCGGCGAAAGAGGCGCGCTTGTCGCTGATCCATCGGA-----GAGCCCAGTCAGCCTT 64322 Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092 || || ||||||| || |||| || |||||||| | | ||| | || ||| Sbjct 64321 CTGCTTGACGACGGGGATGGTCTCGACGGCGTCAAAGAGGAACT--CGCGCTGC-TCGGG 64265 Query 252093 CTC---GATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAA 252149 ||| |||| | || | ||||| ||||| ||||||| |||||| || | | Sbjct 64264 CTCACGGATGTAGGTGTCGATGAGGAGCGAGTAGGTCTCCGAGTGGATGTTCTCCATCAT 64205 Query 252150 CATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTG--GAAAAGTTG 252207 |||||| || | ||||| ||| || | | | ||||| | | |||| | Sbjct 64204 GATCTGGAAACCGTAGAAGCAACGGGCCTCGGCGGCCTGAACTTCAGAGCTGAAACG--C 64147 Query 252208 TTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTG 252267 | ||| |||||| | || || || ||| | | || |||||| | || | | | Sbjct 64146 TCGACAAGGTTCTCGTTGACGATACCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGGGAG 64087 Query 252268 ATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGA 252327 |||||||||||||| | |||||||||||||| ||||||| | |||| | ||| Sbjct 64086 ATGAAGTGACGCTCGTTGTCGTTGAGCTTGTTGTCCCAGTCGTGGAGATCCT--TGGAGA 64029 Query 252328 GG--AACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATT 252375 || | ||| || | |||||||| | | | | ||||||||||||||| Sbjct 64028 GGTCGATTTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATT 63979 >seq141 Length=34748 Score = 95.1 bits (104), Expect = 2e-14 Identities = 233/346 (67%), Gaps = 8/346 (2%) Strand=Plus/Minus Query 293032 GTTTTAAGACCCTTCTTCCATGCGTAGAACAGCATAGATGTCATA-GACTTCAGTGTGGG 293090 || || ||||||||||||||| ||||||| |||| || || | ||| || ||||| Sbjct 31387 GTCTTGAGACCCTTCTTCCATCCGTAGAAGTGCATCGAGGTGAGCTGACCAAAG-GTGGG 31329 Query 293091 AGTGGCCAGGAAAAGGTTCATGCTCTGCGTCTGATCGACAAAGGCACCACGATCAGCAGC 293150 | | ||| | ||| | ||||| ||| || || |||||||| || ||||| Sbjct 31328 TGCCGAAAGGTGGATGTTGAGCGACTGCGACTGGCAGATGAAAGCACCACGGTCGGCAGC 31269 Query 293151 GAGGTCAATCACTGTCTTCATAGAGATCTCCCACGATGTCTTGTACACTGCCTTGACATC 293210 | |||||| | | |||| ||||||||| |||||||||| ||||| | Sbjct 31268 CATGTCAATGATGGCCTTCTGGCTGATCTCCCAGACGGTCTTGTACAGCTTCTTGA--TG 31211 Query 293211 AGGATGA--ATGCCAATAACCTTCTGGATAGACCCTCCGTTGGCAATAATCTGGTTCTTC 293268 || | ||||| || |||||||| || || |||| ||| || || |||||||| Sbjct 31210 CGGTCGGGGATGCCGGGCACGTTCTGGATGGAACCACCGTGGGCGATGATGCGGTTCTTC 31151 Query 293269 ATTGTCTCGGACCA-AGTCCCACGAGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAAC 293327 || || ||| ||| || ||| | | | ||||||||||| | | | |||||| || Sbjct 31150 ATGGTGTCGTTCCACAGACCCT-GCTCGACGAGCTCGCGGAGCAACCAGGGGTTGACGAC 31092 Query 293328 GGGGAACTCACCAGCGAGAGTGCGACGGCTGTAAATGTTCGAAGTG 293373 |||||||||| ||||| ||||| ||| || || || ||| Sbjct 31091 CTGGAACTCACCGGCGAGCACACGACGCGAGTAGATATTGGAGGTG 31046 >seq3 Length=380556 Score = 91.5 bits (100), Expect = 3e-13 Identities = 119/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229 ||||| | |||||||| |||||||||||| ||| || ||||| || ||||||||||| Sbjct 4027 GGTGTTCTCGGACCCAACGGTGCGGGTAAGAGTACGCTGATCAAGGTGCTGACTGGCGA- 3969 Query 280230 ACCCAGGCCACTGAGGGGTCCGTTTG-GAAGCATCCCAACATGCGGATGGCTTACGTCGC 280288 | | ||| | | ||| | | | |||||| |||||| |||| || || | || Sbjct 3968 AACGGTGCCGCAGCAAGGTAAGGTGGAGAAGCACCCCAACTTGCGTATCGCCATGATGGC 3909 Query 280289 TCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGAC 280330 ||||||||||||||||||| | ||| | || || || | ||| Sbjct 3908 TCAGCACGCTTTCCACCACTTGGAGCAGCATCTCGAGAAGAC 3867 >seq62 Length=114261 Score = 87.8 bits (96), Expect = 4e-12 Identities = 170/251 (68%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || ||||| || || ||||| | ||||||||||| || |||| |||||| |||| ||| Sbjct 79416 GGAGAGGACCTTTGCAACTGTCAGTTCTCGCTCGCCTACGGTGCCAAGATTTTGCTCAAC 79475 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 | || ||| |||||||||| || ||| |||||| |||| || || | Sbjct 79476 ACCGCCACTCTCCGTCTCAAGCGTGGTCACAAGTACGGTCTCTGTGGTCGTAACGGTTCC 79535 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||||| ||||||||||| | ||||| ||| | || || || ||| | Sbjct 79536 GGAAAGTCGACTCTCATGCGCGCCATCACCAACGGCCAGGTCGAGGGCTTCCCTTCGCCC 79595 Query 279525 TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCACT 279584 ||||| | || ||| || ||||||||| | ||| |||| || | |||| Sbjct 79596 GAAGAGGTCCGCACCTGGTACGTCGAGCACGACTTGGACGGCTCTGAGGGTGAGATCACT 79655 Query 279585 GTGTTCGACTT 279595 || ||||||| Sbjct 79656 GTCCTCGACTT 79666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027633836921492