Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq27 114 1e-20 seq3372 100 2e-16 seq18 98.7 8e-16 >seq27 Length=198227 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | || || || || || |||||||| || Sbjct 160178 ATACCACCACGGAGACGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCC 160119 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || |||||| | |||||||| || ||||||||||||| ||||| || Sbjct 160118 GAAAGGGTTCGTCCATCTTCCAACTGTTTACCGGCAAAGATGAGACGCTGCTGGTCGGGC 160059 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| |||||| || | | |||| |||||||| ||| ||| Sbjct 160058 GGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGGACTCG 159999 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 114385 || || | ||| | || |||||||| || || || || || ||||||||||| Sbjct 159998 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGGC 159946 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| |||| ||| || | || | || ||||| || ||||||||||| ||| Sbjct 160406 ATACCACCACGAAGTCGCAAGACAAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCG 160347 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| || ||||| || || ||| | |||||||| || ||||| || Sbjct 160346 GAAAGGGTGCGGCCATCCTCGAGTTGCTTTCCTGCGAAAATGAGACGTTGCTGGTCAGGG 160287 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| ||||| || | | || | |||||| | |||||| Sbjct 160286 GGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCCGAGGATTCA 160227 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || |||||||||| || || ||||| |||||||| Sbjct 160226 ACTTCGAGAGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 160177 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || |||| ||| || | || | || || || ||||||||||| ||| Sbjct 160634 ATACCACCGCGGAGTCGCAACACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCG 160575 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| ||| || || || ||||| || ||||||| ||||| ||||| || Sbjct 160574 GAAAGAGTACGGCCATCCTCGAGCTGCTTACCGGCAAAGATGAGTCGCTGCTGGTCAGGT 160515 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| || || |||| | || | ||||| | ||| || Sbjct 160514 GGGATACCTTCCTTGTCCTGGATTTTCGCCTTTACGTTGTCGATCGTGTCCGAGGACTCA 160455 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||| || ||||||||||| || ||||| |||||||| Sbjct 160454 ACCTCGAGAGTGATCGTCTTTCCGGTCAGAGTCTTGACAAAGATCTGCAT 160405 >seq3372 Length=309 Score = 100 bits (110), Expect = 2e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 |||||||| || |||||||| ||||||||||||| ||||| || || || || || ||| Sbjct 16 TCTTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGGGGGATACCCTCCTTG 75 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || ||||| || | | || | ||||||| || || || || | ||| | | Sbjct 76 TCCTGGATCTTGGCCTTGACATTGTCGATTGTGTCGGAAGACTCCACCTCAAGGGTGATC 135 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||||||||||||| || ||||| |||||||| Sbjct 136 GTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 170 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| |||| ||| || | || | || || || || || |||||||| || Sbjct 169 ATACCACCACGAAGTCGCAACACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCC 228 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || |||||||| || ||||||||| ||||||||||||| ||||| || Sbjct 229 GAGAGCGTGCGGCCGTCTTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGG 288 Query 114273 GGAATGCCTTCTTTGTC 114289 ||||| || || ||||| Sbjct 289 GGAATACCCTCCTTGTC 305 >seq18 Length=238221 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | | || | ||| | ||| ||||| || || |||||||| || Sbjct 147519 CCACCACGCAGACGGAGGACGAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCAGAG 147460 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | ||||| || || || || || || || ||||||||||||| || || || || Sbjct 147459 AGTGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCGGGTGGG 147400 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 |||||||| ||||| ||||| || | | || | |||||| | ||| ||||| Sbjct 147399 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACC 147340 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | ||| |||||||||| ||| || || || |||||||| Sbjct 147339 TCGAGGGTGATCGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 147293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420055484580144