Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq141 259 6e-64 seq75 141 1e-28 seq2 127 2e-24 >seq141 Length=34748 Score = 259 bits (286), Expect = 6e-64 Identities = 921/1420 (65%), Gaps = 31/1420 (2%) Strand=Plus/Minus Query 113915 AACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCA 113974 |||||||| ||||| || | | |||||||||| ||||| ||||| |||||||| Sbjct 31087 AACTCACCGGCGAGCACACGACGCGAGTAGATATTGGAGGTGTAAGGCTCGAAGCACTCG 31028 Query 113975 TTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTA 114034 ||| |||| ||| || ||||||||| || |||||||| || | ||| || ||| Sbjct 31027 TTGAAGCCCAGGATCTGACTGGTGGAGGCAGTAGGCATGGGAGCGAGGAGGAGCGAGTTG 30968 Query 114035 CGGAGACC---CTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA---GTT-GAG 114087 || ||||| ||| | | || ||||||| || ||||||| | ||| ||| Sbjct 30967 CGAAGACCGTGCTTGGCGATCTTGG---CCTTGAGCTCGGCCCAGTCCCAAAGGTTCGAG 30911 Query 114088 CTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTC 114147 || | ||| ||||| || ||||||| ||| ||||| || ||||| || | Sbjct 30910 GGG-GTGACACCC---CACATGTCGTACTGGAGCTCACCCTGGGAAGCGGGCGAGCCGGC 30855 Query 114148 AAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGA-GCTCGCCTCGAGGGCTGCGT 114206 | |||||||| | ||| | ||| |||| ||| | | |||| |||||||| |||| Sbjct 30854 GTAGGTCTCGTAGGTGCCGTGCTCCTGAGCCAGCTCGCACGATCGC-TCGAGGGCGGCGT 30796 Query 114207 GATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCG- 114265 | || || ||||| || || | | || | |||||| || || || ||| Sbjct 30795 GGTAGATGGTCTCGAAGATCTGGACGTTGAGACGACGAGCCTCGGGCGACTCGAAAGCGT 30736 Query 114266 AGTCGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATG 114324 || | || | || || | || |||||||| |||||||||| || || || ||||| Sbjct 30735 AGCC--CATGATCATGAAGGCGTCGGCGAGACCCTGGACACCGATACCGATGGGACGATG 30678 Query 114325 TCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATT 114384 | ||| || ||| | ||||| ||| ||||| || | || | ||||| | | | || Sbjct 30677 GCGCATGTTGGACCTGCGAGCCTCCTCGACGGGGTAGTAGTTGATGTCGATGATCTTGTT 30618 Query 114385 TAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGT 114444 || || ||| || |||| | || || || || | | | || | | || Sbjct 30617 GAGGTTCTTGCAGATGGCCTTGGCGACCTCGTGGAGACGCTTGAAGTCGTAGGTCTTGGT 30558 Query 114445 CTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATC 114504 | | || | | || |||||||| || |||| || || || | | ||| || Sbjct 30557 GACGGGGTCGATGAAGGTGGGGAGGGCGATGGAAGCCAAGTTGCAGACGGCGACCTCGTC 30498 Query 114505 CTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTT 114564 || ||||||| || || || || ||||| || || | ||| |||||||| | ||| Sbjct 30497 GGGGGCACTGTACTCGATGATCTCGGTGCACAAGTTGGAGCACTTGATGGTGCCGAGGTT 30438 Query 114565 CTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTC 114624 ||| || || ||| ||| || |||||||| || ||| | || | || ||||| Sbjct 30437 CTTCTGGTTGCTCTTGCGGTTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTACCAGTCTC 30378 Query 114625 CGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTC 114683 || ||||||| ||| || || | ||||| | || | | || | |||||| ||||| | Sbjct 30377 GGTCTGGGACTCGAGGATGGCGTACCAGAGCTTCTGAGCCTTG-ACAGTGCGCTTGGCAC 30319 Query 114684 GCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGA 114743 | ||||| ||||||| |||||| || ||||| || || | || | || Sbjct 30318 GGCCCTCGGCCTCGTAGCGCTCGTAGAGACGCTCGAACTCGTCGCCGTAGCAGTCGGCGA 30259 Query 114744 GCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCA 114803 | || || || | ||||| | ||| ||||| | ||| || ||| |||||||||| Sbjct 30258 GACCGGGGCACTCGTTGGGGCACATGAGGGACCAGTCACCGTTCTGCTCGACACGCTTCA 30199 Query 114804 TGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCC 114863 ||||||| || || | |||||| || ||||||| || ||| ||| | || || | | Sbjct 30198 TGAAGAGATCGGGAACCCAGAGGGCGTAGAAGAGCTCACGAGCACGAACCTCCTCCTTAC 30139 Query 114864 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 114923 | || || || | || | || || | || |||| |||||| || || | ||| | Sbjct 30138 CGTGGTTCTTGCGGAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGCTCAATGTAGA 30079 Query 114924 CCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAA 114980 || | | || ||| ||| |||||| || || | || ||| || | Sbjct 30078 TGGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGGGCGGTGTTGTTGA 30019 Query 114981 ATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGA 115038 | ||||| ||||| |||| |||||| | || || || || || || ||| Sbjct 30018 AGACGCGGAGCATGGGAACGATACCGTTGCTAACACCGTTGGTGCCGGCAATGTAGGAGC 29959 Query 115039 CTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTG 115098 | | || | | || ||||||| | ||| ||||| || || ||| ||||| Sbjct 29958 C--AGTGCCACGGATGCAGTGGATGTTGAGACCGATACCACCGGCGGTCTTGGAGATCAT 29901 Query 115099 CGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAG 115158 ||||| | |||| || ||||||| |||||||| ||||| |||| | | || || Sbjct 29900 GGCGCAGGTCTTGAGCGTGTCGTAGATGCCGTCGATGGAGTCGTCCTTCATGGTGACGAG 29841 Query 115159 GAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTG 115218 ||| || ||| | || || || ||||| |||||||||||||| || | ||||| Sbjct 29840 GAAACACGACGAGAGCTGCGGGTGAGGGGTACCGGCGTTGAAGAGGGTGGGCGAGGCGTG 29781 Query 115219 GATGAACATAC-CTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCC 115277 | | || ||| ||| ||||| | ||||||||| | | || || ||||| | | Sbjct 29780 GGT-AAAGTACTTTTGCGACATGAGGTTGTAGGTCTCGATGGCGCTGGCGATGTCCTGAC 29722 Query 115278 CGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 115317 |||| ||||||| | ||| ||||| | ||||| ||||| Sbjct 29721 CGTGGATACCGACGGCGACACGCATGAGCATGTGCTGGGG 29682 >seq75 Length=98333 Score = 141 bits (156), Expect = 1e-28 Identities = 313/460 (68%), Gaps = 7/460 (2%) Strand=Plus/Minus Query 125757 CGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCA 125816 |||| || ||||| |||||||||||||| ||||| || | | || || || |||| Sbjct 64814 CGTATTCTGCAACCTTTTTCTCGAAGAAGTTGGTCTTTCCTTGAAGACTTATGTTTTCCA 64755 Query 125817 TAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTT-GGCACCCCAATCTGTTTGAGGAGA 125875 | || ||||| ||||| | | | | ||| | || |||| | || ||| Sbjct 64754 TGAAGTCAAAGGGGTTGCTGGCGC-CGTAATGGACCGGGTTTCCAAGCGAAACAAGCAGA 64696 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG-GTT 125934 || || | |||||||| ||||||| ||||| | |||||||| || || | | | Sbjct 64695 CGGTCAGCCACGTACTCTATGTACTGGCACATCAATTTCGAGTTCATGCCAATCAAAGAT 64636 Query 125935 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGC 125994 || ||||| ||||| || ||| | ||||| ||||||||||| || | ||| Sbjct 64635 ACG-GGGAGAGCGTCGGTGAGGAAAGCTTTCTCGATTTCCACGGCCTCGGTGATGATTTT 64577 Query 125995 GTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCT-TGAAGAGTTCCACGGCAAACT 126053 | | | ||||||| | || || | | || ||||||| |||||| | Sbjct 64576 GAGCACGGTGTCCGGGTGCGCTCGCTT-CTTGAGGTGGCTGAAGAGGAGGCAGGCAAAGT 64518 Query 126054 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGA 126113 | ||| ||||| |||||||| |||||||| || || ||||| || || ||||||| Sbjct 64517 CGGTGTGCAGACCTTCGTCACGCGAGATGAGCTCGTTGGAGAAAGTGAGACCGGGCATGA 64458 Query 126114 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCA 126173 |||| |||||||| | |||||| || | || ||||| ||||||||||| ||||| | Sbjct 64457 GACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAACCGGAGAAGAAGATACCCTCGA 64398 Query 126174 CACACGCGAACGCAAAGAGACGCTCAGC-AAAGGAGCGCG 126212 || ||||| |||| ||||||||| || |||| ||||| Sbjct 64397 CAGCGGCGAAGGCAACGAGACGCTCGGCGAAAGAGGCGCG 64358 >seq2 Length=407147 Score = 127 bits (140), Expect = 2e-24 Identities = 261/384 (68%), Gaps = 12/384 (3%) Strand=Plus/Plus Query 172576 CTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTCAGGATGAGACCCTTAATGTGTGA 172635 |||||| || || || |||||| || || | || | |||||||||||| ||||| || Sbjct 60865 CTTGAGCAGCGACGGGTAGAAGTGGTCGAGGAAGTTGATGATGAGACCCTTGATGTGCGA 60924 Query 172636 ACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAGCTCGGAAACATC 172695 ||| |||| |||| ||| ||||| ||||| | | || || || || | || || Sbjct 60925 ACCGTCGTGATCCTGATCGGTCATGATCATGATACTGCCGTATCGCAGACTGTTCACGTC 60984 Query 172696 TTGATACTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGTT 172755 |||||| ||| || || || ||||||||||||| ||||| | |||| || ||| Sbjct 60985 GAGATACTGCTTGCCGTGCTGGAGACCCAAGATCTCCTTGATGGCTTTGATTTCGGCGTT 61044 Query 172756 -----TGATGTGAGTTGCGCCACTGAAGCATCGCGGACATTTTTACACTTCCCACGGAGA 172810 |||| || || | || || || || ||||| || ||| |||||||| Sbjct 61045 CTTCATGATCTG-GTCGTGC----GAGGCTTCACGGACGTTCAAGAGCTTACCACGGAGC 61099 Query 172811 GGGAACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTC 172870 ||||| ||||| |||| || | || ||| | || ||| || || ||||| | ||| Sbjct 61100 GGGAAGACACCATAGTTGTCTCTTCCGACCTCGACAATACCGGCGACAGCGAGCGACTTG 61159 Query 172871 GCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTC-CCCGCCTT 172929 ||||| ||||| || || | |||||| || || | | | | | | | | || || || Sbjct 61160 GCGGAGTCACCTTCGGTGAGGATGAGTGTGCA-GTCCTTGGCTTTCCTGCCACCGGCATT 61218 Query 172930 GTTCGCATCGTCCAACTTGGGAAT 172953 ||| ||||| || | |||||| || Sbjct 61219 GTTGGCATCCTCGAGCTTGGGGAT 61242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597238519828960