Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq18 125 7e-24 seq27 98.7 1e-15 seq3372 91.5 1e-13 seq141 86.0 6e-12 >seq18 Length=238221 Score = 125 bits (138), Expect = 7e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| ||||||||| || || |||||||| || | || || || |||| Sbjct 147504 AGGACGAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCAGAGAGTGTACGGCCGTCC 147445 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||||||| | ||||| |||||||| ||||| || || ||||| || || Sbjct 147444 TCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCGGGTGGGATGCCTTCCTTGTCC 147385 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | || || || || || || | || | ||| Sbjct 147384 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATCGTC 147325 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||||||| || ||||| || ||||| Sbjct 147324 TTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 147293 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| || |||| ||||| || || || |||||||| || | Sbjct 147292 ACCACCACGCAGGCGGAGCACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 147233 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || |||| || ||||||||||||||| | || || ||||||||||| || || Sbjct 147232 AAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCAGGTGG 147173 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| || || ||| || || | || || | ||||| Sbjct 147172 GATGCCCTCCTTATCTTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCAC 147113 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||||||| | || || ||||| || ||||| Sbjct 147112 CTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 147065 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| || |||| ||||| || || || |||||||| || | Sbjct 226370 ACCACCACGCAGGCGGAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 226429 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || |||| || |||||||| ||||| | || || ||||||||||| || || Sbjct 226430 AAGGGTACGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCAGGGGG 226489 Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359 |||||| || || || || || || Sbjct 226490 AATTCCCTCCTTGTCCTGGATCTT 226513 >seq27 Length=198227 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || ||||||||||| || | | |||||| | || || || ||||| || Sbjct 160373 GTGGATTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGTTGCTTTCCT 160314 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || ||||||| || |||||||| || ||||| || || || || || || || ||| Sbjct 160313 GCGAAAATGAGACGTTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTG 160254 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | || || || || ||||| | ||| | ||||||||||||||| || Sbjct 160253 ACGTTGTCGATGGTGTCCGAGGATTCAACTTCGAGAGTGATGGTCTTGCCGGTCAAGGTC 160194 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 160193 TTGACAAAGATCTGCAT 160177 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || ||||||||||| || | | || || | || || |||||||| |||||| | Sbjct 160595 TCCTTCTGAATGTTGTAGTCGGAAAGAGTACGGCCATCCTCGAGCTGCTTACCGGCAAAG 160536 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 ||||| ||||||||||| || || || ||||| || || || ||||| |||||| Sbjct 160535 ATGAGTCGCTGCTGGTCAGGTGGGATACCTTCCTTGTCCTGGATTTTCGCCTTTACGTTG 160476 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || || || || || || | ||| | ||||| ||||||| ||| || || Sbjct 160475 TCGATCGTGTCCGAGGACTCAACCTCGAGAGTGATCGTCTTTCCGGTCAGAGTCTTGACA 160416 Query 64433 AAAATTTGCAT 64443 || || ||||| Sbjct 160415 AAGATCTGCAT 160405 >seq3372 Length=309 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || | ||| || |||| ||||| || || || |||||||| || | Sbjct 171 ACCACCACGAAGTCGCAACACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCCGA 230 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| |||||||||||||||| || || | ||||| ||||||||||| || || Sbjct 231 GAGCGTGCGGCCGTCTTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGGGG 290 Query 64336 AATTCCTTCTTTTTCTTG 64353 ||| || || || || || Sbjct 291 AATACCCTCCTTGTCCTG 308 Score = 89.7 bits (98), Expect = 5e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 64280 GTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATT 64339 ||||| |||||||||||||||| || ||| | ||||| ||||||||||| || || || Sbjct 7 GTGCGGCCGTCTTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGGGGGATA 66 Query 64340 CCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCT 64399 || || || || || || || ||| ||| || | ||| || | ||||| || Sbjct 67 CCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATTGTGTCGGAAGACTCCACCTCA 126 Query 64400 ACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | ||||||||||||| ||| || || || || ||||| Sbjct 127 AGGGTGATCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 170 >seq141 Length=34748 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 155226 GTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAACACGAAGATAAT 155285 || ||||| || || | |||| ||| || |||| || | | ||||||||| || | Sbjct 29884 GTGTCGTAGATGCCGTCGATGGAGTCGTCCTTCATGGTGACGAGGAAACACGACGAGAGC 29825 Query 155286 TGAGGTTGAGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACATTTTGTTG 155345 || || |||||| ||||| || | || || ||||| ||||| || | Sbjct 29824 TGCGGGTGAGGGGTACCGGCGTTGAAGAGGGTGGGCGAGGCGTGGGTAAAGTACTTTTGC 29765 Query 155346 GCGGTTAAGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGATCGCC 155405 | | | |||||| || ||||||||| | | ||||| ||||||| ||||||| || Sbjct 29764 GACATGAGGTTGTAGGTCTCGATGGCGCTGGCGATGTCCTGACCGTGGATACCGACGGCG 29705 Query 155406 ACGCGCATCAGCATGTGTTGAATGCGCTCCGCAACGCGGCCGTTGATGCG 155455 || ||||| |||||||| || ||||| || || |||||||||||| Sbjct 29704 ACACGCATGAGCATGTGCTGGGGACGCTCTGCGACCTTGCCGTTGATGCG 29655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499548543429280