Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq141 304 1e-77 seq27 131 2e-25 seq18 102 8e-17 seq3372 91.5 1e-13 seq25 82.4 8e-11 >seq141 Length=34748 Score = 304 bits (336), Expect = 1e-77 Identities = 1085/1653 (66%), Gaps = 65/1653 (4%) Strand=Plus/Minus Query 152838 ATGAAAGCGTTACGGTCGGCCGCCATCTCAATCATG-CGTTTTGCCTTCATCTCCCAGGC 152896 |||||||| ||||||||| ||||| ||||| ||| | || || || ||||||||| | Sbjct 31291 ATGAAAGCACCACGGTCGGCAGCCATGTCAATGATGGCCTTCTGGCTG-ATCTCCCAGAC 31233 Query 152897 GGTTTTGTACAAATTTTTAACGCTATCCGGTATACCTTCAATGTTCTGAATAGAGCCCTT 152956 ||| ||||||| || || | || || || || || | |||||| || || || Sbjct 31232 GGTCTTGTACAGCTTCTTGATGCGGTCGGGGATGCCGGGCACGTTCTGGATGGAACCACC 31173 Query 152957 GTGTGCAAAAATAGCGTTTCGTATTTCGGGCGTGT-ACACGTTCAGTTTAATGAGGTCAT 153015 ||| || | || ||| ||| | | | ||| ||| | | | | ||| || Sbjct 31172 GTGGGCGATGAT-GCGGTTCTTCATGGTGTCGTTCCACAGACCCTGCTCGACGAGCTCGC 31114 Query 153016 CGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACAT 153075 || ||| | ||||||| || || ||||| || || | ||| || | | | || | || Sbjct 31113 GGAGCAACCAGGGGTTGACGACCTGGAACTCACCGGCGAGCACACGACGCGAGTAGATAT 31054 Query 153076 TGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCG 153135 || ||| |||| || ||| | ||||| ||| || || ||| |||| || || | Sbjct 31053 TGGAGGTGTAAGGCTCGAAGCACTCGTTGAAGCCCAGGATCTGACTGGTGGAGGCAGTAG 30994 Query 153136 GCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACG 153195 ||||| || | | | || || || | |||||| || | | |||| | | Sbjct 30993 GCATGGGAGCGAGGAGGAGCGAGTTGCGAAGACCGTGCTTGGCGATCTTGGCCTTGAGCT 30934 Query 153196 CCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTC 153255 | ||| ||||| || ||| || || | ||||||||||||||| | | | || Sbjct 30933 CGGCCCAGTCCCAAAGGTTCGAGGGGGTGACACCCCACATGTCGTACTGGAGCTCACCCT 30874 Query 153256 GACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGC 153315 | ||||| |||||| | || |||| |||||| || ||||| ||||| | Sbjct 30873 GGGAAGCGGGCGAGCCGGCGTAGGTCTCGTAGGTGCCGTGCTCCTGAGCCAGCTCGCA-C 30815 Query 153316 TAGC-CTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCC-GC 153373 | | |||||| ||| | | ||| ||||| ||| ||| || |||||| || | || Sbjct 30814 GATCGCTCGAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGACGTTGAGA-CGACGAGC 30756 Query 153374 TTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACC 153433 || |||| | | || || | || ||||||||||| |||||||||| ||| Sbjct 30755 CTCGGGCGACTCGAAAGCGTAGCCCATGATCATGAAGGCGTCGGCGAGACCCTGGACACC 30696 Query 153434 GACGCCGATGGGTCGATGCTTCTCGTTG---CTGCG--CCTCGCGCTCGCTATGGGATAG 153488 || |||||||| ||||| | |||| ||||| |||| |||| | ||| ||| Sbjct 30695 GATACCGATGGGACGATGGCGCATGTTGGACCTGCGAGCCTC---CTCG--ACGGGGTAG 30641 Query 153489 TGATTGCGATCGATAATTTTGTTGAGGTTGC-GCACCACCACTTTAGTTATCGCCTTAAG 153547 | ||| ||||| || ||||||||||| ||| | | || | | | | | || Sbjct 30640 TAGTTGATGTCGATGATCTTGTTGAGGTTCTTGCAG-ATGGCCTTGGCGACCTCGTGGAG 30582 Query 153548 TTTCTCGAAATCATAGGTCATTTCGTCGACGCGTACGCATCGATTC----ACGGCAATAG 153603 || ||| || |||||| || || |||| | || || | | ||| || | Sbjct 30581 ACGCTTGAAGTCGTAGGTC--TTGGT-GACGGGGTCG-ATGAAGGTGGGGAGGGCGATGG 30526 Query 153604 ACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGA 153663 | |||| || |||||||| ||| |||| | | ||||||| | |||||||| ||| | Sbjct 30525 AAGCCAAGTTGCAGACGGCGACCTCGTCGGGGGCACTGTACTCGATGATCTCGGTGCACA 30466 Query 153664 GGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTT 153723 |||| ||| || ||| ||| | || | ||| ||||| ||||| ||| ||||| | Sbjct 30465 AGTTGGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCGTCCT 30406 Query 153724 TGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATGC-AGG 153782 || |||| ||| | || || |||||| || | |||| ||| | || || Sbjct 30405 TGTAGAGGATGAAGGGGTTACCAGTCTCGGTCTGGGACTCGAGGATGG-CGTACCAGAGC 30347 Query 153783 TCCTGCGCTCGCACCCGCTGCCGATAGC--GGCCCTCGCTCTCGTATCGCTCGTACAGTC 153840 | ||| || || ||| | || |||||||| |||||| |||||||| || | Sbjct 30346 TTCTGAGCCTTGACAG--TGCGCTTGGCACGGCCCTCGGCCTCGTAGCGCTCGTAGAGAC 30289 Query 153841 GCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCG 153900 |||| |||||||||||||||||||||||||| ||||| |||| | || ||||| || | Sbjct 30288 GCTCGAACTCGTCGCCGTAGCAGTCGGCGAGACCGGGGCACTCGTTGGGGCACATGAGGG 30229 Query 153901 ACCACATATCG-TCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTAC 153959 |||| | || || || | ||| || |||||| ||||| || |||||||| ||||| Sbjct 30228 ACCAGTCACCGTTCTGC-TCGACACGCTTCATGAAGAGATCGGGAACCCAGAGGGCGTAG 30170 Query 153960 ATGAGGTCGCGCGCCTTGCAATCCTCCGC--GCCCATGTTGCGTTTC--AGATTGAGCAC 154015 | ||| || || || | | ||||| | || || | | || | || | ||| | Sbjct 30169 AAGAGCTCACGAGC---ACGAACCTCCTCCTTACCGTGGTTC-TTGCGGAGGTCGAGGAA 30114 Query 154016 GCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TT 154072 | ||| ||| | |||||| || |||||||||| ||| | |||||| |||| || Sbjct 30113 CTCAAAGACGTCCGAGTGCCATGGCTCAATGTAGATGGCAAAGGCACCGGGACGCTTGTT 30054 Query 154073 TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCC 154132 || ||||| ||||||| ||| | | |||||||||||||| | |||||| | | || Sbjct 30053 GCCACCCTGGTCGACGTAGCGGGCGGTGTTGTTGAAGACGCGGAGCATGGGAACGATACC 29994 Query 154133 GCTTGC-GGTGCCGTTGGT--CG--AAT---TGATCTTGCTGCCGCGGGCGCGCACTTGA 154184 | |||| |||||||| || ||| || | | |||| ||| ||| | || Sbjct 29993 G-TTGCTAACACCGTTGGTGCCGGCAATGTAGGAGCCAG-TGCCACGG--ATGCAGTGGA 29938 Query 154185 TGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTC 154244 | ||| | || || || ||| || ||| || || |||||| ||||| Sbjct 29937 T----GTTGAGACCGATACCACCGGCGGTCTTGGAGATCATGGCGCAGGTCTTGAGCGTG 29882 Query 154245 CTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGC 154304 |||||||||||||||| ||||| | | || | ||||||||| | | ||| Sbjct 29881 TCGTAGATGCCGTCGATGGAGTCGTCCTTCATGGTGACGAGGAAACACGACGAGAGCTGC 29822 Query 154305 GGAATGCGCGTTCCCGCCG-AAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCT 154363 || || | | | ||| || ||||||||||| ||||| ||||| ||||| Sbjct 29821 GG-GTGAGGGGTACCGGCGTTGAAGAGGGTGGGCGAGGCGTGGGTAAAGTACTTTTGCGA 29763 Query 154364 CATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGAC 154423 ||| | | ||| || ||||||||| |||| || | ||||| || |||| ||||| Sbjct 29762 CATGAGGTTGTAGGTCTCGATGGCGCTGGCGATGTCCTGACCGTGGATACCGACGGCGAC 29703 Query 154424 GCGCATGAGCATGTGCTGCGGACGTTCGGCGAC 154456 ||||||||||||||||| ||||| || ||||| Sbjct 29702 ACGCATGAGCATGTGCTGGGGACGCTCTGCGAC 29670 >seq27 Length=198227 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| ||||||||||||||| | |||||| |||||||| || ||||||| | | Sbjct 160596 CTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGGCCATCCTCGAGCTGCTTACCGGCAAA 160537 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| || ||||| ||||| || || |||||||| ||||| |||||| |||| | Sbjct 160536 GATGAGTCGCTGCTGGTCAGGTGGGATACCTTCCTTGTCCTGGATTTTCGCCTTTACGTT 160477 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | ||||| | ||||| ||||||| || | ||| || || |||||||| || || Sbjct 160476 GTCGATCGTGTCCGAGGACTCAACCTCGAGAGTGATCGTCTTTCCGGTCAGAGTCTTGAC 160417 Query 138603 AAAAATCTGCAT 138614 ||| |||||||| Sbjct 160416 AAAGATCTGCAT 160405 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || || || | | | |||||||| || ||||||||||| Sbjct 160175 CCACCACGGAGACGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 160116 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | |||||||||| | |||| |||||||| ||||| || || Sbjct 160115 AGGGTTCGTCCATCTTCCAACTGTTTACCGGCAAAGATGAGACGCTGCTGGTCGGGCGGG 160056 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | || | |||| | | |||||||| ||||| | Sbjct 160055 ATGCCCTCCTTGTCC-TGAATCTTGGCCTTGACGTTGT-CAATGGTGTCGGAGGACTCGA 159998 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGC 138617 |||||| || | || || || || || || || || || ||||||||||| Sbjct 159997 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGGC 159946 Score = 89.7 bits (98), Expect = 5e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| |||||||||||||| || ||||| |||||| | || ||||| | | | Sbjct 160824 CTCCTTCTGAATGTTGTAGTCCGACAGGGTACGACCGTCCTCCAACTGCTTACCAGCAAA 160765 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATT 138541 ||| | |||||| ||||| || || ||||| || ||||| ||| || || | ||| Sbjct 160764 GATCAAACGCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATT 160705 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 | || | ||| || | |||||| ||||| | || | || || || || || || || | Sbjct 160704 G-TCAATGGTATCCGACGACTCGACCTCCAAAGTGATGGTCTTTCCCGTGAGCGTCTTGA 160646 Query 138602 CAAAAATCTGCAT 138614 |||| || ||||| Sbjct 160645 CAAAGATTTGCAT 160633 >seq18 Length=238221 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | ||||| ||||||||| || ||||||| Sbjct 226404 GACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTACCGGCG 226463 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| || || || || || ||||| ||| || || | Sbjct 226464 AAGATAAGTCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACG 226523 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||||||||||| || | || ||||| || || || || Sbjct 226524 TTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTA 226583 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 226584 ACAAAGATCTGCAT 226597 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||| | || | ||| | | || ||||| || ||||||||||| Sbjct 147520 GCCACCACGCAGACGGAGGACGAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCAGA 147461 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||||| ||||||||| || || |||| | |||| |||||||| || || || || Sbjct 147460 GAGTGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCGGGTGG 147401 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | | || | |||||| | ||||| || Sbjct 147400 GATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGAC 147341 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | ||| || || |||| ||| || || || |||||||| Sbjct 147340 CTCGAGGGTGATCGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 147293 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | ||||| ||||||||| || || |||| | Sbjct 147258 GACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCA 147199 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || ||||| ||||| || || || || || || || ||| | || | || | Sbjct 147198 AAGATAAGTCGCTGCTGGTCAGGTGGGATGCCCTCCTTATC-TTGAATCTTGGCCTTGAC 147140 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | |||||| | ||||||||||| | || | || || || || || || | Sbjct 147139 GTTG-TCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCT 147081 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 147080 TGACGAAGATCTGCAT 147065 >seq3372 Length=309 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518 ||| || || || ||||| | | |||| |||||||| ||||| || || ||||| || || Sbjct 15 GTCTTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGGGGGATACCCTCCTT 74 Query 138519 GTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCA 138577 ||| ||| || || | ||||| | | ||||||| ||||||||||| | || | Sbjct 75 GTCCTGGATCTTGGCCTTGACATTGT-CGATTGTGTCGGAAGACTCCACCTCAAGGGTGA 133 Query 138578 GCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| || || |||||||| || ||||| |||||||| Sbjct 134 TCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 170 >seq25 Length=198755 Score = 82.4 bits (90), Expect = 8e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || || || | | | |||||||| || |||||||||||| Sbjct 152319 CCACCACGAAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAA 152260 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||| || ||||||| |||| || ||||| ||||| || || Sbjct 152259 AGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 152200 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | |||| || | |||||| | ||||| || Sbjct 152199 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTG-TCGATGGTGTCCGAAGACTCGAC 152141 Query 138567 CTCGACCGTCAGCGTTTTACCAGT 138590 ||||| || | || ||||| || Sbjct 152140 CTCGAGGGTGATGGTCTTACCTGT 152117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496166795048640