Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq27 120 3e-22 seq18 113 4e-20 seq3372 100 3e-16 seq25 100 3e-16 >seq27 Length=198227 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | ||||||||| | || | || ||| || ||||| ||||| ||| Sbjct 160631 CCACCGCGGAGTCGCAACACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAA 160572 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || || || |||| | ||||||||| || || || Sbjct 160571 AGAGTACGGCCATCCTCGAGCTGCTTACCGGCAAAGATGAGTCGCTGCTGGTCAGGTGGG 160512 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||||| ||||||| ||| | ||||| ||| ||||||| ||| || Sbjct 160511 ATACCTTCCTTGTCCTGGATTTTCGCCTTTACGTTGT-CGATCGTGTCCGAGGACTCAAC 160453 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| || ||||||||||| || ||||| |||||||| Sbjct 160452 CTCGAGAGTGATCGTCTTTCCGGTCAGAGTCTTGACAAAGATCTGCAT 160405 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||||| || | || | || || || || ||||| ||||| ||| Sbjct 160403 CCACCACGAAGTCGCAAGACAAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCGGAA 160344 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || || || ||||| ||| | || | || ||||| || || || Sbjct 160343 AGGGTGCGGCCATCCTCGAGTTGCTTTCCTGCGAAAATGAGACGTTGCTGGTCAGGGGGA 160284 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| || ||||| |||| |||| |||||||| || || Sbjct 160283 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTG-TCGATGGTGTCCGAGGATTCAAC 160225 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || | || |||||||||| || || ||||| |||||||| Sbjct 160224 TTCGAGAGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 160177 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||| || Sbjct 160175 CCACCACGGAGACGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 160116 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || | |||||| || || |||| | |||||||| ||||| || Sbjct 160115 AGGGTTCGTCCATCTTCCAACTGTTTACCGGCAAAGATGAGACGCTGCTGGTCGGGCGGG 160056 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || || ||||| ||||| | | |||||| | |||||| Sbjct 160055 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGT-CAATGGTGTCGGAGGACTCGAC 159997 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 127116 |||| ||| | || |||||||| || || || || || ||||||||||| Sbjct 159996 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGGC 159946 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || ||||| ||||| || || || ||| || || | ||| || ||||| | Sbjct 160824 CTCCTTCTGAATGTTGTAGTCCGACAGGGTACGACCGTCCTCCAACTGCTTACCAGCAAA 160765 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041 |||||| |||||||| ||||| || || |||||||||||| ||| || ||||| | Sbjct 160764 GATCAAACGCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATT 160705 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 || | ||| |||| |||||| || | || | || || || || || || || || Sbjct 160704 GTCAATGGTATCCGACGACTCGACCTCCAAAGTGATGGTCTTTCCCGTGAGCGTCTTGAC 160645 Query 127102 AAAAATCTGCAT 127113 ||| || ||||| Sbjct 160644 AAAGATTTGCAT 160633 >seq18 Length=238221 Score = 113 bits (124), Expect = 4e-20 Identities = 120/156 (77%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||| | |||||||||||||| || ||||| |||||| Sbjct 147447 TCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCGGGTGGGATGCCTTCCTTG 147388 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| || ||||| |||| |||| |||||||| |||||| |||| ||| | Sbjct 147387 TCCTGGATCTTGGCCTTGACGTTG-TCGATGGTGTCCGAGGACTCGACCTCGAGGGTGAT 147329 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| |||||||||| ||| || || || |||||||| Sbjct 147328 CGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 147293 Score = 98.7 bits (108), Expect = 9e-16 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||| | ||||||||| || || || || ||||||||| Sbjct 226443 TCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCAGGGGGAATTCCCTCCTTG 226502 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| || ||||| |||| |||| |||||||| | ||| || |||| ||| | Sbjct 226503 TCCTGGATCTTGGCCTTGACGTTG-TCGATGGTGTCCGAAGACTCCACCTCGAGGGTGAT 226561 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || || || || ||||| |||||||| Sbjct 226562 GGTCTTACCCGTGAGGGTCTTAACAAAGATCTGCAT 226597 Score = 86.0 bits (94), Expect = 6e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||| | ||||||||| || || || ||||||||||| Sbjct 147219 TCCTCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCAGGTGGGATGCCCTCCTTA 147160 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 || || || ||||| |||| |||| |||||||| | ||| || || | ||| | Sbjct 147159 TCTTGAATCTTGGCCTTGACGTTG-TCGATGGTGTCCGAAGACTCCACCTCAAGGGTGAT 147101 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||||||| || || || || || |||||||| Sbjct 147100 GGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 147065 >seq3372 Length=309 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||| | |||||||| || || || || ||||||||| Sbjct 16 TCTTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGGGGGATACCCTCCTTG 75 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | |||| ||||| | | ||| || || | ||| | | Sbjct 76 TCCTGGATCTTGGCCTTGACATTGTCGATTGTGTCGGAAGACTCCACCTCAAGGGTGATC 135 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||||||||||||| || ||||| |||||||| Sbjct 136 GTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 170 >seq25 Length=198755 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||| ||| Sbjct 152319 CCACCACGAAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAA 152260 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || || ||| |||||| |||||||| ||||| || Sbjct 152259 AGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 152200 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| |||||||| | |||||| Sbjct 152199 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCCGAAGACTCGACC 152140 Query 127067 TCGACGGT 127074 |||| ||| Sbjct 152139 TCGAGGGT 152132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475409194770880