Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq141 230 3e-55 seq75 129 7e-25 seq2 118 1e-21 >seq141 Length=34748 Score = 230 bits (254), Expect = 3e-55 Identities = 916/1421 (64%), Gaps = 33/1421 (2%) Strand=Plus/Minus Query 115876 AACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCA 115935 |||||||| ||||| || | | ||||| |||| ||||| ||||| |||||||| Sbjct 31087 AACTCACCGGCGAGCACACGACGCGAGTAGATATTGGAGGTGTAAGGCTCGAAGCACTCG 31028 Query 115936 TTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTG 115995 ||| |||| ||| || |||||||| || |||||||| || | ||| || |||| Sbjct 31027 TTGAAGCCCAGGATCTGACTGGTGGAGGCAGTAGGCATGGGAGCGAGGAGGAGCGAGTTG 30968 Query 115996 CGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA---GTT-GAGCTT 116051 || ||||| | || ||||||| || ||||||| | ||| ||| Sbjct 30967 CGAAGACCGTGCTTGGCGATCTTGGCCTTGAGCTCGGCCCAGTCCCAAAGGTTCGAGGGG 30908 Query 116052 TGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAA 116111 || | ||| ||||| || ||||||| ||| ||||| || ||||| || | | Sbjct 30907 -GTGACACCC---CACATGTCGTACTGGAGCTCACCCTGGGAAGCGGGCGAGCCGGCGTA 30852 Query 116112 TGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGA-GCTCGCCTCGAGGGCTGCGTGAT 116170 ||||| || | ||| | ||| |||| ||| | | |||| |||||||| ||||| | Sbjct 30851 GGTCTCGTAGGTGCCGTGCTCCTGAGCCAGCTCGCACGATCGC-TCGAGGGCGGCGTGGT 30793 Query 116171 ACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCG-AGA 116229 | || ||||| || || | | || | |||||| || || || ||| || Sbjct 30792 AGATGGTCTCGAAGATCTGGACGTTGAGACGACGAGCCTCGGGCGACTCGAAAGCGTAGC 30733 Query 116230 CGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCT 116288 | || | || || | || |||||||| |||||||||| || || || ||||| | Sbjct 30732 C--CATGATCATGAAGGCGTCGGCGAGACCCTGGACACCGATACCGATGGGACGATGGCG 30675 Query 116289 CATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAG 116348 ||| || ||| | ||||| ||| ||||| || | || | ||||| | | | || || Sbjct 30674 CATGTTGGACCTGCGAGCCTCCTCGACGGGGTAGTAGTTGATGTCGATGATCTTGTTGAG 30615 Query 116349 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC 116408 || ||| || |||| | || || || || | | | || | | || | Sbjct 30614 GTTCTTGCAGATGGCCTTGGCGACCTCGTGGAGACGCTTGAAGTCGTAGGTCTTGGTGAC 30555 Query 116409 TTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT 116468 | || | | || |||||||| || |||| || || || | | ||| || Sbjct 30554 GGGGTCGATGAAGGTGGGGAGGGCGATGGAAGCCAAGTTGCAGACGGCGACCTCGTCGGG 30495 Query 116469 ATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTT 116528 || ||||||| || || || || ||||| || || | ||| |||||||| | |||||| Sbjct 30494 GGCACTGTACTCGATGATCTCGGTGCACAAGTTGGAGCACTTGATGGTGCCGAGGTTCTT 30435 Query 116529 TTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGT 116588 || || ||| ||| || ||||||||||| || | || | || ||||| || Sbjct 30434 CTGGTTGCTCTTGCGGTTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTACCAGTCTCGGT 30375 Query 116589 TTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCC 116647 ||||||| ||| || || | ||| | | || | | || | |||||| ||||| || | Sbjct 30374 CTGGGACTCGAGGATGGCGTACCAGAGCTTCTGAGCCTTG-ACAGTGCGCTTGGCACGGC 30316 Query 116648 CCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGC 116706 |||| ||||||| |||||| ||| ||||| || || ||| || | ||| Sbjct 30315 CCTCGGCCTCGTAGCGCTCGTAGAGACGCTCGAACTCGTC-GCCGTAGCAGTCGGCGAGA 30257 Query 116707 CCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 116766 || || || | || || | ||| ||||| | ||| || ||| || ||||||||| Sbjct 30256 CCGGGGCACTCGTTGGGGCACATGAGGGACCAGTCACCGTTCTGCTCGACACGCTTCATG 30197 Query 116767 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 116826 ||||| || || | |||||| || ||||||| || ||| ||| | || || | || Sbjct 30196 AAGAGATCGGGAACCCAGAGGGCGTAGAAGAGCTCACGAGCACGAACCTCCTCCTTACCG 30137 Query 116827 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 116886 || || || | || | || || | || |||| |||||| || || | ||| | Sbjct 30136 TGGTTCTTGCGGAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGCTCAATGTAGATG 30077 Query 116887 GCGATTGACCCCTTGCGACG------ACCAGCCTGGTTTACATACCTCGCCGTTGCGTTA 116940 || | | || | |||| ||| |||||| || || | || || ||| Sbjct 30076 GCAAAGGCACC---GGGACGCTTGTTGCCACCCTGGTCGACGTAGCGGGCGGTGTTGTTG 30020 Query 116941 AATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAG 116998 || ||||| ||||| |||| |||||| | || || || || || || ||| Sbjct 30019 AAGACGCGGAGCATGGGAACGATACCGTTGCTAACACCGTTGGTGCCGGCAATGTAGGAG 29960 Query 116999 ACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTT 117058 | || | | || |||||||| | ||| ||||| || || ||| ||||| Sbjct 29959 CC--AGTGCCACGGATGCAGTGGATGTTGAGACCGATACCACCGGCGGTCTTGGAGATCA 29902 Query 117059 GTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGA 117118 ||||| | |||| || ||||||| || ||||| ||||| |||| | | || || Sbjct 29901 TGGCGCAGGTCTTGAGCGTGTCGTAGATGCCGTCGATGGAGTCGTCCTTCATGGTGACGA 29842 Query 117119 GGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGT 117178 |||| || ||| | || || || ||||| |||||||||||||| || | |||| Sbjct 29841 GGAAACACGACGAGAGCTGCGGGTGAGGGGTACCGGCGTTGAAGAGGGTGGGCGAGGCGT 29782 Query 117179 GGATGAACATAC-CTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCC 117237 || | || ||| ||| ||||| | ||||||||| | | | || ||||| | Sbjct 29781 GGGT-AAAGTACTTTTGCGACATGAGGTTGTAGGTCTCGATGGCGCTGGCGATGTCCTGA 29723 Query 117238 CCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGG 117278 ||||| ||||||| | ||| ||||| | ||||| ||||| Sbjct 29722 CCGTGGATACCGACGGCGACACGCATGAGCATGTGCTGGGG 29682 >seq75 Length=98333 Score = 129 bits (142), Expect = 7e-25 Identities = 296/438 (68%), Gaps = 6/438 (1%) Strand=Plus/Minus Query 127247 TTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATAAAATCAAATGGGTTC 127306 |||||||||||||| ||||| || | || || || || ||||| || ||||| ||||| Sbjct 64797 TTCTCGAAGAAGTTGGTCTTTCCTTGAAGACTTATGTTTTCCATGAAGTCAAAGGGGTTG 64738 Query 127307 TTTGAGTTCCAAATTGTT-GGCACCCCAATCTGTTTGAGGAGACGATCCGAGACGTACTC 127365 | | | | ||| | || |||| | || ||||| || | |||||||| Sbjct 64737 CTGGCGC-CGTAATGGACCGGGTTTCCAAGCGAAACAAGCAGACGGTCAGCCACGTACTC 64679 Query 127366 AATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG-GTTACATGGGAGCGCGTCCA 127424 ||||||| ||||| | |||||||| || || | | ||| ||||| ||||| Sbjct 64678 TATGTACTGGCACATCAATTTCGAGTTCATGCCAATCAAAGATACG-GGGAGAGCGTCGG 64620 Query 127425 AGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTGAATAGTGTCCACCC 127484 || ||| | ||||| || ||||| || || | ||| | | | |||||| Sbjct 64619 TGAGGAAAGCTTTCTCGATTTCCACGGCCTCGGTGATGATTTTGAGCACGGTGTCCGGGT 64560 Query 127485 CAGGTCTATTGCGTAAAGTCT-TGAAGAGTTCCACAGCAAACTCTTGGTGGAGACCCTCG 127543 | || || | | | || ||||||| ||||| || ||| ||||| ||| Sbjct 64559 GCGCTCGCTT-CTTGAGGTGGCTGAAGAGGAGGCAGGCAAAGTCGGTGTGCAGACCTTCG 64501 Query 127544 TCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAAC 127603 ||||| |||||||| || || ||||| ||||| ||||||||||| |||||||| | | Sbjct 64500 TCACGCGAGATGAGCTCGTTGGAGAAAGTGAGACCGGGCATGAGACCACGCTTCTTGAGC 64441 Query 127604 CAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAAT 127663 ||||| || | || || || ||||||||||| ||||| ||| ||||| |||| Sbjct 64440 CAGAAGATGGAGGCGAAGGAACCGGAGAAGAAGATACCCTCGACAGCGGCGAAGGCAACG 64381 Query 127664 AGACGCTCGGCAAAGGAG 127681 ||||||||||| || ||| Sbjct 64380 AGACGCTCGGCGAAAGAG 64363 >seq2 Length=407147 Score = 118 bits (130), Expect = 1e-21 Identities = 259/384 (67%), Gaps = 12/384 (3%) Strand=Plus/Plus Query 176596 CTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGA 176655 |||||| || || || |||||| || || | |||| |||||||||||| ||||| || Sbjct 60865 CTTGAGCAGCGACGGGTAGAAGTGGTCGAGGAAGTTGATGATGAGACCCTTGATGTGCGA 60924 Query 176656 ACCATCGTTATCCGCATCCGTCATAATCATGAGCCGACCATAGCGAAGCTCGGAAACATC 176715 ||| |||| |||| ||| ||||| ||||||| | || || || || | || || Sbjct 60925 ACCGTCGTGATCCTGATCGGTCATGATCATGATACTGCCGTATCGCAGACTGTTCACGTC 60984 Query 176716 TTGATAATCCTTACCTTGTTGAAGACCCAAAATCTTCTTGAGATCATTGAACTCTTGGTT 176775 |||| | ||| || || || |||||||| |||| ||||| | |||| || ||| Sbjct 60985 GAGATACTGCTTGCCGTGCTGGAGACCCAAGATCTCCTTGATGGCTTTGATTTCGGCGTT 61044 Query 176776 -----TGATGTGAGTTGCGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGA 176830 |||| || || | || || || || ||||| || ||| || ||||| Sbjct 61045 CTTCATGATCTG-GTCGTGC----GAGGCTTCACGGACGTTCAAGAGCTTACCACGGAGC 61099 Query 176831 GGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTC 176890 ||||| ||||| |||| || | || ||| | | ||| || || ||||| | ||| Sbjct 61100 GGGAAGACACCATAGTTGTCTCTTCCGACCTCGACAATACCGGCGACAGCGAGCGACTTG 61159 Query 176891 GCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTC-CCCGCCTT 176949 ||||| ||||| || || | |||||| || || | | | | | | | | || || || Sbjct 61160 GCGGAGTCACCTTCGGTGAGGATGAGTGTGCA-GTCCTTGGCTTTCCTGCCACCGGCATT 61218 Query 176950 GTTCGCATCGTCCAACTTGGGAAT 176973 ||| ||||| || | |||||| || Sbjct 61219 GTTGGCATCCTCGAGCTTGGGGAT 61242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613389007837920