Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq18 134 3e-26 seq27 127 5e-24 seq492 114 3e-20 seq3372 109 1e-18 seq25 98.7 2e-15 >seq18 Length=238221 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || ||||||||||| |||| ||||||||| | | || | || || Sbjct 226386 AGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCC 226445 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||||||||| || ||||||||||| || |||||| || ||| Sbjct 226446 TCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCC 226505 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || || | ||||| ||| Sbjct 226506 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTC 226565 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || ||||| || || Sbjct 226566 TTACCCGTGAGGGTCTTAACAAAGATCTG 226594 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || || || ||||| ||||| |||| ||||||||||| | || | || || Sbjct 147504 AGGACGAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCAGAGAGTGTACGGCCGTCC 147445 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||| ||||||||||||||||| || || || ||||| ||| Sbjct 147444 TCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCGGGTGGGATGCCTTCCTTGTCC 147385 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || || | ||||||||| Sbjct 147384 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATCGTC 147325 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||| || || || || || Sbjct 147324 TTGCCGGTCAAAGTCTTGACGAAGATCTG 147296 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| |||||||||||||| |||| ||||||||| | | || | || || Sbjct 147276 AGCACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCC 147217 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||| ||||| || ||||||||||| || || || || || Sbjct 147216 TCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCAGGTGGGATGCCCTCCTTATCT 147157 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| ||| |||| |||||| | | || || || | ||||| ||| Sbjct 147156 TGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTC 147097 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || || Sbjct 147096 TTGCCGGTGAGGGTCTTGACGAAGATCTG 147068 >seq27 Length=198227 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || ||||||||||||||| || ||||| || | ||||||||| | | || Sbjct 160397 CGAAGTCGCAAGACAAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCGGAAAGGGTG 160338 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || || |||||||| ||||| |||||||| |||||||| || ||| || Sbjct 160337 CGGCCATCCTCGAGTTGCTTTCCTGCGAAAATGAGACGTTGCTGGTCAGGGGGAATGCCC 160278 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| |||| |||||| | | ||| || || | Sbjct 160277 TCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCCGAGGATTCAACTTCGAGA 160218 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | || || ||||| || || Sbjct 160217 GTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTG 160180 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| || |||||||| |||| ||||||||| | | || | ||||||| Sbjct 160160 AGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTTCGTCCATCT 160101 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||| || ||||| |||||||||||||||||||| || || || || ||| Sbjct 160100 TCCAACTGTTTACCGGCAAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 160041 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| ||| || | |||||| | | || || || | ||||| ||| Sbjct 160040 TGAATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTC 159981 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || || Sbjct 159980 TTGCCGGTGAGGGTCTTGACGAAGATCTG 159952 Score = 107 bits (118), Expect = 5e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||| | ||| |||||| || | ||||||||| | || || | || || Sbjct 160844 AGGACAAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCCGACAGGGTACGACCGTCC 160785 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || || ||||| | |||||||||||| || || || || ||| Sbjct 160784 TCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCGGGTGGGATACCCTCCTTGTCC 160725 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || || | ||| || | | || || ||||| ||||| ||| Sbjct 160724 TGGATCTTGGCCTTGACATTGTCAATGGTATCCGACGACTCGACCTCCAAAGTGATGGTC 160665 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || ||||| ||||| Sbjct 160664 TTTCCCGTGAGCGTCTTGACAAAGATTTG 160636 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| || || ||||| | || |||||| || | ||||||||| | | ||| Sbjct 160625 CGGAGTCGCAACACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTA 160566 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| ||||| |||||||| ||||||||||| || || ||| Sbjct 160565 CGGCCATCCTCGAGCTGCTTACCGGCAAAGATGAGTCGCTGCTGGTCAGGTGGGATACCT 160506 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| || || ||| ||| |||| ||||| | | || || || | Sbjct 160505 TCCTTGTCCTGGATTTTCGCCTTTACGTTGTCGATCGTGTCCGAGGACTCAACCTCGAGA 160446 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || ||||| || ||||| || || Sbjct 160445 GTGATCGTCTTTCCGGTCAGAGTCTTGACAAAGATCTG 160408 >seq492 Length=568 Score = 114 bits (126), Expect = 3e-20 Identities = 131/170 (77%), Gaps = 16/170 (9%) Strand=Plus/Minus Query 43091 CCTTTTAGTCTCTGAACCTTTT-CTTCTTTCGAAGAA-CTTGGCTGCGGATTGTCCAATC 43148 || ||||||||||||||||| |||||| |||||| |||||||||||||||||||||| Sbjct 374 CCATTTAGTCTCTGAACCTTCCACTTCTTGCGAAGAGGCTTGGCTGCGGATTGTCCAATC 315 Query 43149 CTCAACATTTTTACCATACCC-ACGCCATTACGCT--TGGTGCA-----ACTCTTTCGA- 43199 | | |||||||||||||| | ||||||| || || |||| | ||| ||| Sbjct 314 TCTAGCGTTTTTACCATACCCGAGGCCATTAACCTGGTGCTGCACCCCTAATCTCACGAT 255 Query 43200 ---GAAGCGGTAGTTGAGGCTCTAAGGAGTTTCCCGCAATTTGAGGATGT 43246 | ||||||| | |||||||||||||||||||||||| |||||| Sbjct 254 GGGGCCGCGGTAGCTAGAGCTCTAAGGAGTTTCCCGCAATTT--GGATGT 207 >seq3372 Length=309 Score = 109 bits (120), Expect = 1e-18 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || |||||||| || ||||||||||| |||| ||||||||| | | || Sbjct 178 CGAAGTCGCAACACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTG 237 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | || ||||| |||||||| || ||||||||||||||||||||||| || Sbjct 238 CGGCCGTCTTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGG 287 >seq25 Length=198755 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| | ||| | ||||||||||| |||| ||||||||| | | || Sbjct 152313 CGAAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTG 152254 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| ||||||||||| || ||||||||||| || || || Sbjct 152253 CGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCC 152194 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| |||||| | | || || || | Sbjct 152193 TCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCCGAAGACTCGACCTCGAGG 152134 Query 199589 GTGATCGTCTTACCCGT 199605 ||||| |||||||| || Sbjct 152133 GTGATGGTCTTACCTGT 152117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178688802772604