Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq27 134 2e-26 seq18 132 5e-26 seq25 123 3e-23 seq3372 91.5 2e-13 >seq27 Length=198227 Score = 134 bits (148), Expect = 2e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || || ||||| || |||||||| || || |||||||| || || || || |||| || Sbjct 160841 ACAAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCCGACAGGGTACGACCGTCCTCC 160782 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | |||||| || || || ||||| ||||||||||||| || | | |||||||||| | Sbjct 160781 AACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGG 160722 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||||| | | | || || ||| || || |||| |||||||| || Sbjct 160721 ATCTTGGCCTTGACATTGTCAATGGTATCCGACGACTCGACCTCCAAAGTGATGGTCTTT 160662 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| ||||| || |||||||||||||| Sbjct 160661 CCCGTGAGCGTCTTGACAAAGATTTGCAT 160633 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||||||| || ||||| || |||||||| || || ||||||||||| ||||| || | Sbjct 160619 CGCAACACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGGCCA 160560 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || ||||||||||| ||||| || || | ||||||||||| | || | | |||||| Sbjct 160559 TCCTCGAGCTGCTTACCGGCAAAGATGAGTCGCTGCTGGTCAGGTGGGATACCTTCCTTG 160500 Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||| ||| ||| | ||| | | | |||||| || || || || | ||||| Sbjct 160499 TCCTGGATTTTCGCCTTTA-CGTTGTCGATCGTGTCCGAGGACTCAACCTCGAGAGTGAT 160441 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || ||||| || || |||||||| ||||| Sbjct 160440 CGTCTTTCCGGTCAGAGTCTTGACAAAGATCTGCAT 160405 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || ||||||||||| || ||||| | || ||||| ||||| || ||||| Sbjct 160367 TCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGTTGCTTTCCTGCGAAA 160308 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || |||||||| | || | || |||||||||| |||||| ||||| ||| Sbjct 160307 ATGAGACGTTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGA-CGTT 160249 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| ||||| || || | |||||||| ||||| |||| || || || Sbjct 160248 GTCGATGGTGTCCGAGGATTCAACTTCGAGAGTGATGGTCTTGCCGGTCAAGGTCTTGAC 160189 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 160188 AAAGATCTGCAT 160177 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || || || | || || | ||| || ||||| || Sbjct 160140 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTTCGTCCATCTTCCAACTGTTTACCGGCAAA 160081 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||||| ||| | || |||||||||| ||||| ||||| ||| Sbjct 160080 GATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGT 160022 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || || || || | |||||||| ||||| || || || || | Sbjct 160021 TGTCAATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGA 159962 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 159961 CGAAGATCTGCAT 159949 >seq18 Length=238221 Score = 132 bits (146), Expect = 5e-26 Identities = 149/197 (76%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || || || |||| ||||||||||| |||||||| Sbjct 226406 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTACCGGCGAA 226465 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | |||||||||| |||||| ||||| ||| Sbjct 226466 GATAAGTCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 226524 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| || ||||| || | |||||||| || ||||| || || |||| Sbjct 226525 TGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTAA 226584 Query 46581 CAAAGATTTGCATTTTG 46597 ||||||| ||||| ||| Sbjct 226585 CAAAGATCTGCATCTTG 226601 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || || || |||| ||||||||||||||||| || Sbjct 147256 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAA 147197 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | || |||||| || ||||| ||||| ||| Sbjct 147196 GATAAGTCGCTGCTGGTCAGGTGGGATGCCCTCCTTATCTTGAATCTTGGCCTTGA-CGT 147138 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| || ||||| || | |||||||| ||||| || || || || | Sbjct 147137 TGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGA 147078 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 147077 CGAAGATCTGCAT 147065 Score = 109 bits (120), Expect = 6e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| || || || || |||| ||||||||||||||||| || Sbjct 147483 TCCTTCTGGATGTTGTAGTCAGAGAGTGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAG 147424 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | |||||||| |||| || | || ||||||||| |||||| ||||| ||| Sbjct 147423 ATGAGACGCTGCTGATCGGGTGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 147365 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || || || || | ||||| || ||||| |||| || || || Sbjct 147364 GTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATCGTCTTGCCGGTCAAAGTCTTGAC 147305 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 147304 GAAGATCTGCAT 147293 >seq25 Length=198755 Score = 123 bits (136), Expect = 3e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||||| || |||||| ||||| ||||||||||| || ||||| |||| ||| Sbjct 152301 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCG 152242 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| |||||||| |||| |||||||||||||| || | || |||||||||| | Sbjct 152241 AGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 152182 Query 46505 ATCTTCTTCTTGA 46517 ||||| ||||| Sbjct 152181 ATCTTAGCCTTGA 152169 >seq3372 Length=309 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 46424 GATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCC 46483 || || ||||| |||| || |||||||| || || || || | ||||||||||| | Sbjct 1 GAGAGCGTGCGGCCGTCTTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGG 60 Query 46484 GGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCC 46543 || | | |||||||||| |||||| ||||| | | | |||||| || ||| Sbjct 61 GGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATTGTGTCGGAAGACTCC 120 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | ||||| || ||||| ||||| || || |||||||| ||||| Sbjct 121 ACCTCAAGGGTGATCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 170 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||||||| || || | ||| |||||| ||||| |||||||| || || ||||| || Sbjct 184 CGCAACACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCG 243 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || |||||||| || ||||| || | ||||||||||| | || | | ||||||| Sbjct 244 TCTTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGGGGAATACCCTCCTTG 303 Query 46499 TCC 46501 ||| Sbjct 304 TCC 306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565129506822240