Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq75 354 8e-93 seq27 132 5e-26 seq18 127 2e-24 seq25 116 4e-21 seq3372 95.1 1e-14 >seq75 Length=98333 Score = 354 bits (392), Expect = 8e-93 Identities = 524/730 (72%), Gaps = 13/730 (2%) Strand=Plus/Minus Query 132718 ACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGG-TTTCGCAATTAAGTCC 132776 || ||||| | ||| |||||| |||| ||||| || |||| ||||| | || | || Sbjct 64704 ACAAGCAGACGGTCAGCCACGTACTCTATGTACTGGCACATCAATTTCG-AGTTCATGCC 64646 Query 132777 CAGCAGACGCACCGGCAGCGCTTCGGTGAG-AAAGCGTTGCTCGATGGCGACCGCGTCGG 132835 | || | || || || || |||||||| ||||| || |||||| | || || |||| Sbjct 64645 AATCAAAGATACGGGGAGAGCGTCGGTGAGGAAAGCTTT-CTCGATTTCCACGGCCTCGG 64587 Query 132836 TGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGC 132895 ||| ||||| ||| ||| | || || | | | || |||| | | || Sbjct 64586 TGATGATTTTGAGCACGGTGTCCGGGTGCGCTCGCTTCTTGAGGTGGCTGAAGAGGAGGC 64527 Query 132896 AAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGC 132955 | ||||||||| |||| || ||||| | || ||||| |||||| |||||| | | Sbjct 64526 AGGCAAAGTCGGTGTGCAGACCTTCGTCACGCGAGATGAGCTCGTTGGAGAAAGTGAGAC 64467 Query 132956 CGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGA 133015 |||||||||| || || || |||||||| || |||| |||||| || || ||||||| Sbjct 64466 CGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAACCGGAGAAGAAGA 64407 Query 133016 CGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGA 133075 |||||||| || ||||| || || || |||||| |||| | ||| ||| | || Sbjct 64406 TACCCTCGACAGCGGCGAAGGCAACGAGACGCTCGGCGAAAGAGGCGCGCTTGTCGCTGA 64347 Query 133076 TCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCA 133135 |||| || || ||||| || ||||| | |||||| || || || |||| ||||| || Sbjct 64346 TCCATCGGAGAGCCCAGTCAGCCTTCTGCTTGACGACGGGGATGGTCTCGACGGCGT-CA 64288 Query 133136 ACAAACGGAGTTTCTCTTCCGAGGA--ACGCACGTAGGTGTCGATGAGGGTCGAATACAT 133193 | | | | | | | || | || ||| | |||||||||||||||| ||| || | Sbjct 64287 A-AGAGGAACTCGCGCTGCTCGGGCTCACGGATGTAGGTGTCGATGAGGAGCGAGTAGGT 64229 Query 133194 TTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCAC 133253 |||||||| | ||||||||| ||| || || ||||| ||||| || |||||| | | Sbjct 64228 CTCCGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGGGCCTCGGCGGC 64169 Query 133254 CTGCACTTCTTGAGC-GAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGG 133312 ||| ||||| |||| |||||||||||| || || ||||||||||| |||||| ||||| Sbjct 64168 CTGAACTTCA-GAGCTGAAACGCTCGACAAGGTTCTCGTTGACGATACCGTCGGAGGCGG 64110 Query 133313 CGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTT---CAAGCGCTCCC 133369 |||| ||||| || ||||| |||||| || |||||||||||||| | | |||| Sbjct 64109 CGAAGAAGGCGAGGACGTGGGAGATGAAGTGACGCTCGTTGTCGTTGAGCTTGTTGTCCC 64050 Query 133370 AGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTT 133429 ||||| | |||||||| ||||| | |||||| ||||||| || || |||||||| | Sbjct 64049 AGTCGTGGAGATCCTTGGAGAGGTCGATTTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCT 63990 Query 133430 TTTTGTACAT 133439 | |||||||| Sbjct 63989 TCTTGTACAT 63980 >seq27 Length=198227 Score = 132 bits (146), Expect = 5e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| |||| |||||| || || Sbjct 159949 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCC 160008 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || || | ||||| ||||| || || ||||||| Sbjct 160009 GACACCATTGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCA 160067 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | || || |||||| |||| || | || ||||| |||||||| Sbjct 160068 GCAGCGTCTCATCTTTGCCGGTAAACAGTTGGAAGATGGACGAACCCTTTCGGACTACAA 160127 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| | || || || ||||| || ||| Sbjct 160128 CATCCAGAAGGAGTCCACCCTCCACTTGGTCCTCCGT 160164 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| |||||||| |||| || || || | Sbjct 160177 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACTCTCGAAGTTGAATCCTCG 160236 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| |||||| | ||||| Sbjct 160237 GACACCATCGACAACG-TCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCA 160295 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||||| ||| || || || || || || | |||||||| ||||||||| Sbjct 160296 GCAACGTCTCATTTTCGCAGGAAAGCAACTCGAGGATGGCCGCACCCTTTCCGACTACAA 160355 Query 38423 CATCCAAAAGGAAGCGACGCTGCA 38446 ||| || |||||| | || || || Sbjct 160356 CATTCAGAAGGAATCCACTCTCCA 160379 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || ||||||||||| || |||||||| | || |||||| | | Sbjct 160633 ATGCAAATCTTTGTCAAGACGCTCACGGGAAAGACCATCACTTTGGAGGTCGAGTCGTCG 160692 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || |||| ||||| ||||| || || ||||||| Sbjct 160693 GATACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAG 160752 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | || || || ||| |||| |||| || ||||| ||||||||| Sbjct 160753 CAGCGTTTGATCTTTGCTGGTAAGCAGTTGGAGGACGGTCGTACCCTGTCGGACTACAAC 160812 Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || ||||| ||| || |||| | || || ||| || | ||||| Sbjct 160813 ATTCAGAAGGAGAGC-ACTTTGCACCTTGTCCTCCGTCTGCGTGGCGG 160859 >seq18 Length=238221 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| || |||||| |||| |||||| || | Sbjct 147293 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACGATCACCCTCGAGGTCGAGTCCTCG 147352 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || || || |||| || Sbjct 147353 GACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCACCCGATCA 147411 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | || ||||| ||||| || |||| || || ||| |||||||| Sbjct 147412 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACACTCTCTGACTACAA 147471 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| |||||| ||||||| ||| | || || ||| || | || ||| Sbjct 147472 CATCCAGAAGGAATCGACGCTTCATCTCGTCCTCCGTCTGCGTGGTGGC 147520 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || |||||||| || ||||||||| |||| || ||| | Sbjct 226600 AAGATGCAGATCTTTGTTAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTGGAGTCT 226541 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | |||| | || | || |||| ||||| |||||||||||| | || Sbjct 226540 TCGGACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGA 226482 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | ||| || || ||||| || |||| || ||||| ||||| Sbjct 226481 CCAGCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGTACCCTTTCGGACTA 226422 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| |||| || || | ||||| || Sbjct 226421 CAACATCCAGAAGGAGTCGACCCTTCACCTCGTGCTCCG 226383 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| | || || ||| | | Sbjct 147065 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTCG 147124 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || || | || || ||||| || || | ||||| Sbjct 147125 GACACCATCGACAACG-TCAAGGCCAAGATTCAAGATAAGGAGGGCATCCCACCTGACCA 147183 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || ||||| ||||| || |||| || ||||| |||||||| Sbjct 147184 GCAGCGACTTATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTTTCGGACTACAA 147243 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| |||| || || | ||||| || Sbjct 147244 CATCCAGAAGGAGTCGACTCTTCACCTCGTGCTCCG 147279 >seq25 Length=198755 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327 || || || ||||||||| |||| |||||| | | |||| | | | | | || | Sbjct 152117 ACAGGTAAGACCATCACCCTCGAGGTCGAGTCTTCGGACACCATCGACAATGTCAAGGCT 152176 Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| || ||| ||||||| ||||| || || | ||| || || Sbjct 152177 AAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGTAAG 152236 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || |||| |||||||| ||||||||||||||| ||||| |||| |||| Sbjct 152237 CAGCTCGAGGACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACCTTGCAC 152296 Query 38448 TTGGTGCTGCGT 38459 ||||| || ||| Sbjct 152297 TTGGTCCTCCGT 152308 >seq3372 Length=309 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| |||||| | ||||| ||||| ||||| | ||| || || ||||| || Sbjct 305 GACAAGGAGGGTATTCCCCCTGACCAGCAGCGTCTCATCTTCGCTGGTAAGCAGCTTGAA 246 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| ||||| ||| |||||||||||||| ||||| |||| || || | ||| || Sbjct 245 GACGGCCGCACGCTCTCGGACTACAACATCCAGAAGGAGTCGACACTTCACCTTGTGTTG 186 Query 38457 CG 38458 || Sbjct 185 CG 184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500076441710080