Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq6 425 7e-114 seq48 149 8e-31 seq1 125 9e-24 >seq6 Length=350643 Score = 425 bits (470), Expect = 7e-114 Identities = 783/1138 (69%), Gaps = 10/1138 (1%) Strand=Plus/Minus Query 7022 ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTC 7081 |||||||| ||||| | || ||||| || || ||||| |||||||| |||| || || Sbjct 111189 ATGGCGGCCTGGACGGCGGCACCGTAGGCAACAGCCTCGTCGGGGTTGATCGACTTGTTG 111130 Query 7082 AGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGAT 7141 || || |||||| || | || | | | | || | || ||||| || || || Sbjct 111129 AGCTCACGACCGTTGAAGAAGTCAGTGAGGAGCTTCTGGACCTTGGGGATACGGGTGGAA 111070 Query 7142 CCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTT 7201 |||||||| | ||||| || | || || |||||||| ||||| || || Sbjct 111069 CCACCGACAAGGACGATCTCGTGGACGGAACCCTTGTCGATCTTGGAGTCACGGAGGACC 111010 Query 7202 TTTTCGACAGGTTCCATACATTTACG-GAACAAGTCCATACACAGTTCCTCAAAACGTGC 7260 || ||||| || || || | | || ||| | ||| || || ||||| ||||| || Sbjct 111009 TTCTCGACGGGCTCGATGG-TGTGCGAGAAGAGGTCACCGCAGAGCTCCTCGAAACGGGC 110951 Query 7261 ACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGT 7320 |||||| ||||| || ||||| || | || ||| | | ||| || || || ||||| || Sbjct 110950 ACGGGTGATGGAGGTGTAGAAGTCGATACCCTCGAAGAGCGAGTCGATCTCGATGGTGGT 110891 Query 7321 TTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAG 7380 || || | ||| || | || ||||| || |||||||| || || || | ||||||||| Sbjct 110890 CTGGGCAGCCGACGAGAGGGTACGCTTGGCACGCTCACAGGCGGTGCGGAGACGACGAAG 110831 Query 7381 GGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG 7440 |||||| | ||| || | || ||||| | || || || ||||| | |||||| Sbjct 110830 GGCACGGGCGTTGGTGGTCAAGTCCTTCTTGTTCTTGCGCTTGAACTCCTGGACGAAGTG 110771 Query 7441 TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTT 7500 | ||| | ||||| || |||||||||||||| || || || ||||| || || Sbjct 110770 GTTGACGAGACGGTTGTCGAAGTCCTCACCACCCAAGTGGGTGTCACCGGCGGTGGCCTT 110711 Query 7501 GACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG 7560 ||| || |||||||| | || ||| | || | ||| ||||| || ||||| ||||| || Sbjct 110710 GACCTCGAAGATACCCTCCTCGATGGTCAAGAGCGACACATCGAAGGTACCTCCACCAAG 110651 Query 7561 GTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGC 7620 || || ||||| |||||| | || | || | ||||| ||||||||||| |||||||| Sbjct 110650 ATCGAAGATGAGGACGTTCTTCTCACCCTCGGTCTTCTTGTCGAGACCGTAAGCGATAGC 110591 Query 7621 CGCCGCCGTTGGTTCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCAT 7679 || || || || || || || ||||| | ||| ||| || || | || | | || | Sbjct 110590 GGCGGCGGTGGGCTCGTTGATGATACGCATGAC-GTTGAGACCGGAGATGATACCGGCGT 110532 Query 7680 CTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCG 7739 | || || || || || ||||| ||||| ||||| || || || || ||||| || ||| Sbjct 110531 CCTTGGTGGCCTGACGCTGCGAGTCGTTGAAGTAAGCGGGAACGGTGACGACGGCATCCT 110472 Query 7740 TGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATG 7799 |||| | |||||| || | || ||| | || ||| ||| || ||||| || | Sbjct 110471 TGACGGTGCCACCGAGGTAGGCCTCGGCGGTCTCACGCATCTTGAGGAGGACCATGGACG 110412 Query 7800 AAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTT 7859 | |||||||| | | || ||| | ||||| || | || | ||| |||| Sbjct 110411 AGATCTCTTCGGGGGTGAAGGTCTTCTTCTCACCCTTGTACTCGATGCGGATC-TGGGGC 110353 Query 7860 TATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTT 7919 | || | | |||| || | |||| | | ||| | ||||| ||| || |||| Sbjct 110352 TTGCCACCG-ACCGAGG-TGACCTCGAAGGGCCAGTGCTTCATGTCGGACTGAACCTCGG 110295 Query 7920 GGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCA 7979 ||| ||||| | ||||| |||||||| || || || || ||||| | |||||||| Sbjct 110294 CGTCGTCGAACTTGCGGCCGATGAGACGCTTGGCGTCGAAGACGGTGTTGTGGGGGTTCA 110235 Query 7980 TGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGA 8039 |||| |||||||| || || || ||||| ||||| || || || || |||| Sbjct 110234 TGGCGACCTGGTTCTTGGCAGCATCTCCGATGAGACGCTC---CGAGTCGGTGAAGGCGA 110178 Query 8040 CGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTT 8099 | || || ||||| || || || || |||||||| || |||| || || |||||||||| Sbjct 110177 CATATGAGGGGGTGGTACGGTTACCCTGGTCGTTGGCGATAACCTCGACACGGTCGTTTT 110118 Query 8100 GCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGCTTGAGTCAT 8157 |||||||| | || ||||| || || || || | ||| |||||||| || | ||||| Sbjct 110117 GCCAGACGGCAACACACGAGTAGGTAGTACCAAGATCGATACCGATGGCCTTGGTCAT 110060 >seq48 Length=136349 Score = 149 bits (164), Expect = 8e-31 Identities = 455/694 (66%), Gaps = 22/694 (3%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||| | ||| || || || ||||| || || || || | ||| Sbjct 59461 TCAAAGTCCTCACCACCAAGGTGGGTGTCACCAGCGGTGGCAAGCACCTCGAAAACACCC 59520 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || || | | ||||||||| || ||||||||||| || || | | | | Sbjct 59521 GAGTCGATCGAGAGAAGCGAAACATCGAAGGTACCACCACCGAGATCGTAGACAATGATC 59580 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | || ||| | || || ||| || |||||||| ||||| || || || || || || Sbjct 59581 TGCGACTCGCCATCCTT---CTTGTCAAGACCGTAAGCGATGGCAGCAGCGGTGGGCTCG 59637 Query 7637 TTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || | ||||| || ||| || || || || || || | ||||| || || || ||||| Sbjct 59638 TTGACGATACGGAGGACA-TTGAGACCGGCGATGGTACCGGCATCCTTGGTAGCCTGTCG 59696 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || | ||||| |||||||| ||||| || ||||| |||| ||||| || | || || Sbjct 59697 CTGAGCGTCGTTGAAGTAGGCGGGGACGGTGACGACGGCGTGAGTGACCTTGTGGCCAAG 59756 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 || | || ||| | || ||||| || |||||||| | |||| ||| || | | Sbjct 59757 GTAAGCCTCGGCGGTCTCCTTCATCTTCTGGAGAACCATGGCGGAAACCTCCTCGGGGGT 59816 Query 7816 AAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCG--CAGCACCG 7873 || ||| | || ||||| | | ||| | || ||| || ||| | | | Sbjct 59817 GAAGACCTTCTTGTCGCCGTTGACAGTAACCTGGATAGCGGGCTTG-CCGTTCTTCTC-- 59873 Query 7874 GGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTC-CGAAA-ACT 7931 || | ||| | | | || || | | || || || | || ||| Sbjct 59874 --GACGAGCTTGAAGGGGAGGTGCTTGGCGTCCTTCTTGAG--GTCGGACTCGCCCCACT 59929 Query 7932 TTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGT 7991 | | ||||| |||||||| || ||||| | ||||||| ||||||| ||| | |||| Sbjct 59930 TGCGACCGATGAGACGCTTGGCGTCAAAGATAGTGTTTTCGGGGTTCTGGGCGGCCTGGT 59989 Query 7992 TCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGG 8051 |||| || ||||| |||| ||||| || | || || ||||||||||| || | Sbjct 59990 TCTTGGCAGCGTCACCGACGAGACGCTCGGGA------GTGAAGGCGACGTACGAGGGAG 60043 Query 8052 TCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGA 8111 | |||| || ||||||||||| | || ||||| || ||| |||| | |||||| Sbjct 60044 TGATTCGGTTACCTTGGTCGTTGGTGATGATTTCGACTCGGCCGTTGACCTGTGCGCCGA 60103 Query 8112 CGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145 | ||||| || || ||||| | ||| ||||| || Sbjct 60104 CACACGAGTATGTAGTTCCAAGATCGATACCAAT 60137 >seq1 Length=422913 Score = 125 bits (138), Expect = 9e-24 Identities = 276/411 (67%), Gaps = 12/411 (3%) Strand=Plus/Minus Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||||| ||||| |||||||| ||| | | ||| ||||| || | | | | ||| || Sbjct 70300 TCCTCGAAACGGGCACGGGTGATGTTGGCCTGGAAGTCAACACCCTGGAAGAGCGAGTCG 70241 Query 7307 ATTTCAATGGTTGTTTG--TGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCG 7364 | || | ||| || || || || || || | || ||||| || |||||||| |||| Sbjct 70240 ACCTCGACGGTGGTCTGGGTGACG--GACGAGAGGGTACGCTTAGCACGCTCACAGGCCG 70183 Query 7365 TTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAA 7424 || | ||| || | |||||| | | ||| || || || ||| | || || | | Sbjct 70182 AACGGAGACGGCGGACGGCACGGGCATCACCAGAGATGTCGAGCTTGTTCTTGCGCTCGA 70123 Query 7425 ACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTAT 7484 |||| | |||||| |||||| ||||| || |||||||| | ||| || | Sbjct 70122 ACTCCTTCTTGAAGTGGTCAAGGAGGGCGTTGTCGAAGTCCTCACCACCAAGGTGGGTGT 70063 Query 7485 CCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAA 7544 | || ||||| || ||||| | |||| ||| || ||||| | | ||| ||||| | Sbjct 70062 CACCAGCGGTGGCCTTGACGGCGAAGACACCGCCGGTGATGTTGAGGAGCGAGACATCGA 70003 Query 7545 ACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGT----CGTCTTTGTTCTTA 7600 | ||||| ||||| || || | ||||| |||||| | ||| || ||| | Sbjct 70002 AGGTACCTCCACCAAGATCGTAGATGAGGACGTTCTTCTCGGTGGACGACTTGGAG---- 69947 Query 7601 TCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGA 7651 ||||||||||| ||||| || || || || || || || || ||||| ||| Sbjct 69946 TCGAGACCGTAAGCGATGGCGGCGGCGGTGGGCTCGTTGATGATACGGAGA 69896 Score = 91.5 bits (100), Expect = 2e-13 Identities = 117/161 (73%), Gaps = 3/161 (2%) Strand=Plus/Minus Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 ||||| |||||||| || || || || || | |||||||||||| | |||||||| Sbjct 69163 CCGATGAGACGCTTGGCGTCGAAGACGGTCTGGCGGGGGTTCATGGCGGCCTGGTTCTTG 69104 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || || || ||||| ||||| || | || || || || ||||| || ||||| || Sbjct 69103 GCGGCATCACCGATGAGACGCTC---GCTCTCGGTGAAAGCAACGTAGGAAGGGGTGGTG 69047 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTT 8097 || || || |||||||| || || || || || || ||||| Sbjct 69046 CGGTTACCCTGGTCGTTGGCGATGATCTCGACACGCTCGTT 69006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635010441666080