Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq141 262 5e-65 seq75 138 1e-27 seq2 136 5e-27 >seq141 Length=34748 Score = 262 bits (290), Expect = 5e-65 Identities = 1129/1754 (64%), Gaps = 63/1754 (4%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| ||||| |||||||||| || | || || | | Sbjct 29682 CCCCAGCACATGCTCATGCGTGTCGCCGTCGGTATCCACGGTCAGGACATCGCCAGCGCC 29741 Query 111672 TTGGAGACATACGACAAGATGTCCCGTG-GTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| ||| || ||||| | ||| || | |||||| | || |||||||| Sbjct 29742 ATCGAGACCTACAACCTCATGTCGCAAAAGTACTTT-ACCCACGCCTCGCCCACCCTCTT 29800 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||| ||||| || || || | || |||||||| | | | ||||| || Sbjct 29801 CAACGCCGGTACCCCTCACCCGCAGCTCTCGTCGTGTTTCCTCGTCACCATGAAGGACGA 29860 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || ||| | ||||| |||| ||| |||| || ||| ||||| ||| || || Sbjct 29861 CTCCATCGACGGCATCTACGACACGCTCAAGACCTGCGCCATGATCTCCAAGACCGCCGG 29920 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTACA 111908 ||||||||| | ||||||| || | | || | ||| || || || || Sbjct 29921 TGGTATCGGTCTCAACATCCACTGCATCCGTGGCACT--GGCTCCTACATTGCCGGCACC 29978 Query 111909 AATGGTCA-ATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 || ||| | || | ||||| |||| ||||| ||||| || ||| ||| || ||||| Sbjct 29979 AACGGTGTTAGCA-ACGGTATCGTTCCCATGCTCCGCGTCTTCAACAACACCGCCCGCTA 30037 Query 111968 TGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATG 112021 || |||| | ||| ||||| | || | | || |||| |||||||||| Sbjct 30038 CGTCGACCAGGGTGGCAACAAGCGTCCC---GGTGCCTTTGCCATCTACATTGAGCCATG 30094 Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCG 112081 |||| |||| || | |||||||| || | || ||||| ||| | ||||||| | Sbjct 30095 GCACTCGGACGTCTTTGAGTTCCTCGACCTCCGCAAGAACCACGGTAAGGAGGAGGTTC- 30153 Query 112082 GTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 112140 |||| || || ||||||| ||| |||||| |||| ||||||||||||||| | || ||| Sbjct 30154 GTGCTCGTGAGCTCTTCTACGCCCTCTGGGTTCCCGATCTCTTCATGAAGCGTGTCGAGC 30213 Query 112141 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGG 112200 ||| || | ||||| ||| | || || || || ||||||||| |||| | | Sbjct 30214 AGAACGGTGACTGGTCCCTCATGTGCCCCAACGAGTGCCCCGGTCTCGCCGACTGCTACG 30273 Query 112201 GTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCG-ACG 112259 | || ||||| || |||||| ||||||| || | || || | ||| || Sbjct 30274 GCGACGAGTTCGAGCGTCTCTACGAGCGCTACGAGGCCGAGGGCCGTGCCA-AGCGCACT 30332 Query 112260 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 112318 || | || | || | | ||| | || || ||| |||| || ||||||||||||| || Sbjct 30333 GT-CAAGGCTCAGAAGCTCTGGTACGCCATCCTCGAGTCCCAGACCGAGACTGGTAACCC 30391 Query 112319 ATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 112378 | || || ||||| ||||| |||| ||||| || || ||||| | || || Sbjct 30392 CTTCATCCTCTACAAGGACGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGGCACCAT 30451 Query 112379 CAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 112438 |||| | |||||| | || || || ||| | || | | | | || ||| || || Sbjct 30452 CAAGTGCTCCAACTTGTGCACCGAGATCATCGAGTACAGTGCCCCCGACGAGGTCGCCGT 30511 Query 112439 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGA 112498 || ||| | || || ||||| ||||||| | | || || | || ||||| | || Sbjct 30512 CTGCAACTTGGCTTCCATCGCCCTCCCCACCTTCATCGACCCCGTCACCAAGACCTACGA 30571 Query 112499 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGA 112558 | | |||||||| || | || | || || ||||| |||| | || || Sbjct 30572 CTTCAAGCGTCTCCACGAGGTCGCCAAGGCCATCTGCAAGAACCTCAACAAGATCATCGA 30631 Query 112559 TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 112618 | || | |||||||| ||| ||||| | || || ||| | || ||||| || || Sbjct 30632 CATCAACTACTACCCCGTCGAGGAGGCTCGCAGGTCCAACATGCGCCATCGTCCCATCGG 30691 Query 112619 TCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT--TCTTTGTCGCCACGCATTTGATTCC 112676 | |||||||||| |||||||| || | ||||| || | | || |||| || || || Sbjct 30692 TATCGGTGTCCAGGGTCTCGCCGACGCCTTCATGATCATGG--GCTACGCTTTCGAGTCG 30749 Query 112677 GACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAG 112736 ||| || |||| | | || || ||||| || || |||||||| || || Sbjct 30750 CCCGAGGCTCGTCGTCTCAACGTCCAGATCTTCGAGACCATCTACCACGCCGCCCTCGA- 30808 Query 112737 GCGA--GTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAG 112794 |||| || | ||| |||| ||| | || | || || |||| | || || || | Sbjct 30809 GCGATCGTGC-GAGCTGGCTCAGGAGCACGGCACCTACGAGACCTACGCCGGCTCGCCCG 30867 Query 112795 CTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACC------AAGCTTCACT 112848 |||| || || | ||| || | || |||||| |||| ||| || ||| | Sbjct 30868 CTTCCCAGGGTGAGCTCCAGTACGACATGTGG---GGTGTCACCCCCTCGAACCTT---T 30921 Query 112849 ACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGA 112908 ||||||| || ||||||| ||| || | |||||||| ||| || | Sbjct 30922 GGGACTGGGCCGAGCTCAAGGCCAAGATCGCCAAGCACGGTCTTCGCAACTCGCTCCTCC 30981 Query 112909 TGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 112968 | || || ||||| || ||||||||| || ||| |||| || || ||||| || | Sbjct 30982 TCGCTCCCATGCCTACTGCCTCCACCAGTCAGATCCTGGGCTTCAACGAGTGCTTCGAGC 31041 Query 112969 CCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACA 113028 | ||||| | || ||||| | | | ||||| || ||||| | | ||||| Sbjct 31042 CTTACACCTCCAATATCTACTCGCGTCGTGTGCTCGCCGGTGAGTTCCAGGTCGTCAA-- 31099 Query 113029 AGCATCTCGTGGAT----GACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGAT 113084 | || || | | || ||| ||| ||||| ||| | | |||||| | Sbjct 31100 --CCCCTGGTTGCTCCGCGAGCTCGTCGAGCAGGGTCTGTGGAACGACACCATGAAGAAC 31157 Query 113085 CTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAG 113144 | ||| | ||||||||||| || || | | || || || || ||| Sbjct 31158 CGCATCATCGCCCACGGTGGTTCCATCCAGAACGTGCCCGGCATCCCCGACCGCATCAAG 31217 Query 113145 AAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGAT 113204 ||| ||||| || || ||||| |||| ||||| ||||||||||||| || || Sbjct 31218 AAGCTGTACAAGACCGTCTGGGAGATCAGCCAGAAGGCCATCATTGACATGGCTGCCGAC 31277 Query 113205 CGTGGTCGCTTCAT-TG---ATCAAAGT--CAAAGTATGAATCTATTCATGGAAAGTCCA 113258 |||||| ||||| || || ||| | | || | || ||| || | ||| Sbjct 31278 CGTGGTGCTTTCATCTGCCAGTCGCAGTCGCTCAACATCCACCT-TTC--GGCA--CCCA 31332 Query 113259 ACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGG 113318 | || | ||||| | || |||||| | ||| | ||||||||||||||||| || || Sbjct 31333 CCTTTGGTC-AGCTCACCTCGATGCACTTCTACGGATGGAAGAAGGGTCTCAAGACCGGT 31391 Query 113319 ATGTATTACCTCCG 113332 | || |||||||| Sbjct 31392 ACCTACTACCTCCG 31405 >seq75 Length=98333 Score = 138 bits (152), Expect = 1e-27 Identities = 127/161 (79%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 || || || ||||| ||| | || || || ||| ||||||||||||||||| |||||| Sbjct 64364 TCTTTCGCCGAGCGTCTCGTTGCCTTCGCCGCTGTCGAGGGTATCTTCTTCTCCGGTTCC 64423 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 ||| | | || | |||||||||||||| ||||||||||| |||||| ||||||||| Sbjct 64424 TTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTCACTTTCTCCAAC 64483 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||| ||||| |||||||| || || ||| || ||||| Sbjct 64484 GAGCTCATCTCGCGTGACGAAGGTCTGCACACCGACTTTGC 64524 >seq2 Length=407147 Score = 136 bits (150), Expect = 5e-27 Identities = 240/347 (69%), Gaps = 6/347 (2%) Strand=Plus/Plus Query 176723 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 176782 |||| ||||||||||||||||| |||||||||| ||| ||| ||||||||||||| | Sbjct 60899 TTGATGATGAGACCCTTGATGTGCGAACCGTCGTGATCCTGATCGGTCATGATCATGATA 60958 Query 176783 CGACCATACCGAAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATC 176842 | || || || || | || || |||| | ||| || || || |||||||||||| Sbjct 60959 CTGCCGTATCGCAGACTGTTCACGTCGAGATACTGCTTGCCGTGCTGGAGACCCAAGATC 61018 Query 176843 TTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGTGACAGAGGCATCACGAACA 176902 | ||||| | |||| || ||| ||| ||| | ||||| ||||| || Sbjct 61019 TCCTTGATGGCTTTGATTTCGGCGTTCTTCATGATCTGGTCGTGCGAGGCTTCACGGACG 61078 Query 176903 TTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAGA 176962 ||| ||| ||||| || ||||||||||| |||| || | || ||| | | | Sbjct 61079 TTCAAGAGCTTACCACGGAGCGGGAAGACACCATAGTTGTCTCTTCCGACCTCGACAATA 61138 Query 176963 CCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTACA---CTTG 177019 || || || ||||||| || || || ||||| || || | ||||||||| || |||| Sbjct 61139 CCGGCGACAGCGAGCGACTTGGCGGAGTCACCTTCGGTGAGGATGAGTGTGCAGTCCTTG 61198 Query 177020 CCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAAT 177066 | | |||| ||| || ||||| ||||| || | ||||| || Sbjct 61199 GC-TTTCCTGCC--ACCGGCATTGTTGGCATCCTCGAGCTTGGGGAT 61242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620622813976640