Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq141 239 5e-58 seq78 100 3e-16 seq75 98.7 1e-15 >seq141 Length=34748 Score = 239 bits (264), Expect = 5e-58 Identities = 1049/1642 (64%), Gaps = 35/1642 (2%) Strand=Plus/Minus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559 ||| | |||||| ||||| |||||| |||||| || || |||||||| ||||| Sbjct 31313 GTTGAGCGACTGCGACTGGCAGATGAAAGCACCACGGTCGGCAGCCATGTCAATGATGGC 31254 Query 109560 CTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCAC 109619 ||| ||||| || |||||||| |||||||||| |||||||| ||||| ||| | Sbjct 31253 CTTCTGGCTGATCTCCCAGACGGTCTTGTACAGCTTCTTGATGCGGTCGGGGATGCCGGG 31194 Query 109620 GATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGA-CCAGA 109678 | ||| || || || ||||| | ||| | | |||||| | ||| ||| | Sbjct 31193 CACGTTCTGGATGGAACCACCGTGGGCGATGATGCGGTTCTTCATGG-TGTCGTTCCACA 31135 Query 109679 GACCGACCTTTTTGAGATCGT----CAACAAGATGCTTGTTGACCACGACAAATTCACCA 109734 |||| || ||| ||| |||| || | ||||| || || ||||| Sbjct 31134 GACCCTGCTCGACGAGCTCGCGGAGCAACCAGGGG----TTGACGACCTGGAACTCACCG 31079 Query 109735 GCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCT 109794 || || || || |||||| || | ||||| || ||||| ||||| ||| ||| Sbjct 31078 GCGAGCACACGACGCGAGTAGATATTGGAGGTGTAAGGCTCGAAGCACTCGTTGAAGCCC 31019 Query 109795 AGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCC 109854 ||||| || ||||| || || ||||||||||| | ||| || ||| || ||||| Sbjct 31018 AGGATCTGACTGGTGGAGGCAGTAGGCATGGGAGCGAGGAGGAGCGAGTTGCGAAGACCG 30959 Query 109855 TTCGTCTTTACCCGCTCACGCATTG----CGTCCCAATCATAACGACCACTAAATTTAGT 109910 | | || | || || ||| || |||| || || | | | || Sbjct 30958 TGC---TTGGCGATCTTG-GCCTTGAGCTCGGCCCAGTCCCAAAGGT---TCGAGGGGGT 30906 Query 109911 CTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACT 109970 |||| |||||| || || || |||||| | ||| || || || | | | Sbjct 30905 GACACC---CCACATGTCGTACTGGAGCTCACCCTGGGAAGCGGGCGAGCCGGCGTAGGT 30849 Query 109971 CTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACAT 110030 |||||| | || | ||| |||| |||| | || ||| || || || || || || Sbjct 30848 CTCGTAGGTGCCGTGCTCCTGAGCCAGCTCGCACGATCGCTCGAGGGCGGCGTGGTAGAT 30789 Query 110031 AGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGG-GAAGACCAC 110089 ||||| || || || | || | | |||| ||| | ||||| | | || ||| Sbjct 30788 GGTCTCGAAGATCTGGACGTTGAGACGACGAGCCTCGGGCGACTCGAAAGCGTAGCCCAT 30729 Query 110090 AAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGT 110149 | | | || | || || |||||||| ||||||| ||| ||||| ||||| ||||| Sbjct 30728 GATCA-TGAAGGCGTCGGCGAGACCCTGGACACCGATACCGATGGGACGATGGCGCATGT 30670 Query 110150 TAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCT 110209 | || | ||||| || |||||||| ||||| |||||||| | ||||| |||| Sbjct 30669 TGGACCTGCGAGCCTCCTCGACGGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTCT 30610 Query 110210 TCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTAT 110269 | | | ||| | || || ||||| | | | ||| | || || || | | Sbjct 30609 TGCAGATGGCCTTGGCGACCTCGTGGAGACGCTTGAAGTCGTAGGTCTTGGTGACGGGGT 30550 Query 110270 TGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGG 110329 || | ||||||| || || || || | ||||| || | |||||| | | Sbjct 30549 CGATGAAGGTGGGGAGGGCGATGGAAGCCAAGTTGCAGACGGCGACCTCGTCGGGGGCAC 30490 Query 110330 TGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGAT 110389 |||| || | || || || ||||||||||| | ||| ||| || | ||||||||| | Sbjct 30489 TGTACTCGATGATCTCGGTGCACAAGTTGGAGCACTTGATGGTGCCGAGGTTCTTCTGGT 30430 Query 110390 TCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTG 110449 | ||| |||| || ||||| ||||| ||| | ||| ||||||| || ||||| | Sbjct 30429 TGCTCTTGCGGTTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTACCAGTCTCGGTCTGGG 30370 Query 110450 ACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCG-TTAGCGAGACCTTC 110507 ||| ||| ||||| | ||| | | || | | | | ||||| ||| || || | || || Sbjct 30369 ACTCGAGGATGGCGTACCAGAGCTTCTGAGCCTTG-ACAGT-GCGCTTGGCACGGCCCTC 30312 Query 110508 CTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTT 110567 ||||||| ||| | ||| || || | ||||| || | ||||| Sbjct 30311 GGCCTCGTAGCGCTCGTAGAGACGCTCGAACTCGTCGCCGTAGCAGTCGGCGAGACCGGG 30252 Query 110568 CGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAG 110627 || || ||| || | ||||||||| | || || ||| || | ||||||||| || Sbjct 30251 GCACTCGTTGGGGCACATGAGGGACCAGTCACCGTTCTGCTCGACACGCTTCATGAAGAG 30192 Query 110628 GTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTT 110687 || |||| ||| | || |||| || ||||| |||| |||| || | ||| ||||| Sbjct 30191 ATCGGGAACCCAGAGGGCGTAGAAGAGCTCACGAGCACGAACCTCCTCCTTACCGTGGTT 30132 Query 110688 GAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGAT 110747 ||| || || | || || | || |||||||||||||| || | |||| || | Sbjct 30131 CTTGCGGAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGCTCAATGTAGATGGCAAA 30072 Query 110748 GGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCT 110804 || || ||| || |||||| || ||||| || ||| |||||||| | Sbjct 30071 GGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGGGCGGTGTTGTTGAAGACGCG 30012 Query 110805 GAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGC 110864 |||||| |||| || || | | ||| || || || ||| ||| | || | Sbjct 30011 GAGCATGGGAACGATACCGTTGCTAACACCGTTGGTGCCGGCAATGTAGGAGCCAGTGCC 29952 Query 110865 ACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CT 110923 ||| ||| |||||| | | ||| |||||||| || ||| || || || | Sbjct 29951 ACGGATGCAGTGGATGTTGAGACCGATACCACCGGCGGTCTTGGAGATCATGGCGCAGGT 29892 Query 110924 CTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAG 110983 || |||| || | || || || || || || || |||| ||| | || || || | Sbjct 29891 CT-TGAGCGTGTCGTAGATGCCGTCGATGGAGTCGTCCTTCATGGTGACGAGGAAACACG 29833 Query 110984 AAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACA 111043 | || | ||| || |||| || || || |||||||| || || | || || | || Sbjct 29832 ACGAGAGCTGCGGGTGAGGGGTACCGGCGTTGAAGAGGGTGGGCGAGGCGTGGGTAAAGT 29773 Query 111044 GACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATAC 111103 ||| ||||| |||||| || |||| ||| || | || | |||||| |||| Sbjct 29772 ACTTTTGCGACATGAGGTTGTAGGTCTCGATGGCGCTGGCGATGTCCTGACCGTGGATAC 29713 Query 111104 CAATGGCAACTCGCATGAACAT 111125 | | ||| || ||||||| ||| Sbjct 29712 CGACGGCGACACGCATGAGCAT 29691 >seq78 Length=94480 Score = 100 bits (110), Expect = 3e-16 Identities = 209/304 (69%), Gaps = 12/304 (4%) Strand=Plus/Plus Query 11672 TCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCT 11731 ||||||| | ||| ||||| ||||||||||| | ||| || || || | | || | Sbjct 26114 TCTTACCAATAGCATCAATTTCATCGATGAAGATGATGCAAGGAGCGT-GCTTCTTGGCA 26172 Query 11732 GTTCGAAAAGT-TCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTT 11790 | ||| | || || || || | | || ||||| || |||||||| ||||| | Sbjct 26173 TTGGCAAACATGTCTCGCACTCGGCTAGGACCGACACCGACAAACATCTCTACGAACT-- 26230 Query 11791 GCGGCA--GAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGG 11847 ||| | | | || || | |||||| || | || ||||||||| |||| || || Sbjct 26231 -CGGAACCGGAGACGGACAAGAAGGGCACTTGAGCCTCACCAGCAGTGGCCTTTGCAAGC 26289 Query 11848 AGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA 11907 || ||||| || ||||| || | ||||| ||| | ||| ||||| || ||||| || || Sbjct 26290 AGCGTCTTGCCGGTACCGGGGGGACCAGAGAGGATGGCACCACGTGGAATCTTTGCGCCG 26349 Query 11908 --CTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCT 11965 |||| ||| || |||||||||||||||| |||| |||| | ||||||| Sbjct 26350 AGCTTCTC--GTACTTTTCGGGCTTCTTGAGGAAGTTGACAAACTCCATGATCTCCTCCT 26407 Query 11966 TGGC 11969 |||| Sbjct 26408 TGGC 26411 >seq75 Length=98333 Score = 98.7 bits (108), Expect = 1e-15 Identities = 345/527 (65%), Gaps = 15/527 (3%) Strand=Plus/Minus Query 119217 ACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATAAAGTCAAAA 119276 ||| | || |||||||| || ||||| || | || ||||||||||| |||||||| Sbjct 64803 ACCTTTTTCTCGAAGAAGTTGGTCTTTCCTTGAAGACTTATGTTTTCCATGAAGTCAAAG 64744 Query 119277 GGATTTTTGGAGTTCCAGATTGGT--GGTTGACCAACTTGTTTCAGAAGACGATCGGAGA 119334 || || ||| | || | ||| || | |||| || ||||| || | | Sbjct 64743 GGGTTGCTGGCG--CCGTAATGGACCGGGTTTCCAAGCGAAACAAGCAGACGGTCAGCCA 64686 Query 119335 CATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACACGGG-AGA 119393 | ||||| || || | | ||||| || ||| ||||| || || | | | ||||| ||| Sbjct 64685 CGTACTCTATGTACTGGCACATCAATTTCGAGTTCATGCCAATCAAAG-ATACGGGGAGA 64627 Query 119394 GCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGTGAATAGTT 119453 || ||| || ||| |||||||| ||||| || || | | ||| | | | || Sbjct 64626 GCGTCGGTGAGGAAAGCTTTCTCGATTTCCACGGCCTCGGTGATGATTTTGAGCACGGTG 64567 Query 119454 TCTGTCGATG-GTTTGTTTCTCAAGA-GTTTAAACAACTCTACGGCAAATTCTTGATGAA 119511 || | | || | | | |||| || | | || | |||||| || || | Sbjct 64566 TCCG--GGTGCGCTCGCTTCTTGAGGTGGCTGAAGAGGAGGCAGGCAAAGTCGGTGTGCA 64509 Query 119512 GCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTT 119571 | ||||| || || ||||||||||| || ||| || || |||||||| || | | Sbjct 64508 GACCTTCGTCACGCGAGATGAGCTCGTTGGAGAAAGTGAGACCGGGCATGAGACCACGCT 64449 Query 119572 TCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGA 119631 |||| ||||| ||||||| || || || |||||||| ||||| ||| ||||| Sbjct 64448 TCTTGAGCCAGAAGATGGAGGCGAAGGAACCGGAGAAGAAGATACCCTCGACAGCGGCGA 64389 Query 119632 AAGCGAATAGACGCTCAGCAAAAG-GTCGAGACTTGTC---GAACCACTTGAGAGCCCAG 119687 | || | |||||||| || |||| | || | |||||| || ||| |||||||||| Sbjct 64388 AGGCAACGAGACGCTCGGCGAAAGAGGCGCG-CTTGTCGCTGATCCATCGGAGAGCCCAG 64330 Query 119688 TTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAG 119734 | ||||| ||| | | ||||| || | || ||| || || || Sbjct 64329 TCAGCCTTCTGCTTGACGACGGGGATGGTCTCGACGGCGTCAAAGAG 64283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588862533773600