Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq141 226 3e-54 seq75 141 1e-28 seq2 96.9 4e-15 >seq141 Length=34748 Score = 226 bits (250), Expect = 3e-54 Identities = 573/863 (66%), Gaps = 15/863 (2%) Strand=Plus/Minus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || |||||||| || ||||| ||||| || || ||| || | ||||||| | Sbjct 30538 GGGAGGGCGATGGAAGCCAAGTTGCAGACGGCGACCTCGTCGGGGGCACTGTACTCGATG 30479 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || ||||||||||| | ||| || || || | ||||| ||||| ||||| | Sbjct 30478 ATCTCGGTGCACAAGTTGGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGG 30419 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||| || ||||||||||| ||| |||| | || ||||| ||||| |||| ||| || Sbjct 30418 TTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTACCAGTCTCGGTCTGGGACTCGAGGATG 30359 Query 106637 GCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTT 106695 || | ||| | | || | | || | ||| || ||||| || ||||| |||||||| Sbjct 30358 GCGTACCAGAGCTTCTGAGCCTTG-ACAGTGCGCTTGGCACGGCCCTCGGCCTCGTAGCG 30300 Query 106696 TGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGG 106755 |||||| || ||||| || || ||||| |||||| || || || || Sbjct 30299 CTCGTAGAGACGCTCGAACTCGTCGCCGTAGCAGTCGGCGAGACCGGGGCACTCGTTGGG 30240 Query 106756 ACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCA 106815 || | || ||||| | ||| || ||| || ||||||||||| || || |||| ||| Sbjct 30239 GCACATGAGGGACCAGTCACCGTTCTGCTCGACACGCTTCATGAAGAGATCGGGAACCCA 30180 Query 106816 CAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTC 106875 |||| | ||||| || | | ||| |||| || | ||| ||||| || | || Sbjct 30179 GAGGGCGTAGAAGAGCTCACGAGCACGAACCTCCTCCTTACCGTGGTTCTTGCGGAGGTC 30120 Query 106876 AAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG 106935 |||||||| | || |||| |||||||||||||| |||| || | | || | Sbjct 30119 GAGGAACTCAAAGACGTCCGAGTGCCATGGCTCAATGTAGATGGCAAAGGCACC---GGG 30063 Query 106936 ACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGG 106989 |||| ||| | || | || ||||| || ||| ||| || ||||| ||||| || Sbjct 30062 ACGCTTGTTGCCACCCTGGTCGACGTAGCGGGCGGTGTTGTTGAAGACGCGGAGCATGGG 30003 Query 106990 AATAATACCATCTGAT-TGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACAT 107048 || ||||| | || | ||| || || || ||| || | || | | | Sbjct 30002 AACGATACCGT-TGCTAACACCGTTGGTGCCGGCAATGTAGGAGCCAGTGCCACGGATGC 29944 Query 107049 CATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAG 107108 ||||||| | || ||||| || || ||| ||||| || || | | || | Sbjct 29943 AGTGGATGTTGAGACCGATACCACCGGCGGTCTTGGAGATCATGGCGCAGGTCTTGAGCG 29884 Query 107109 TTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCT 107168 | | ||||| |||| ||| ||||| ||||| ||| || ||||| || || | || Sbjct 29883 TGTCGTAGATGCCGTCGATGGAGTCGTCCTTCATGGTGACGAGGAAACACGACGAGAGCT 29824 Query 107169 GCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGG 107227 |||| || ||||| || ||||||||||| || | ||||| | || ||| ||| Sbjct 29823 GCGGGTGAGGGGTACCGGCGTTGAAGAGGGTGGGCGAGGCGTGGGT-AAAGTACTTTTGC 29765 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 ||||| || ||| ||||| | | | | ||||| | |||||||| |||| ||| Sbjct 29764 GACATGAGGTTGTAGGTCTCGATGGCGCTGGCGATGTCCTGACCGTGGATACCGACGGCG 29705 Query 107288 ACACGCATAAACATGTATTGGGG 107310 |||||||| | ||||| ||||| Sbjct 29704 ACACGCATGAGCATGTGCTGGGG 29682 >seq75 Length=98333 Score = 141 bits (156), Expect = 1e-28 Identities = 301/439 (69%), Gaps = 8/439 (2%) Strand=Plus/Minus Query 117001 TTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAATGGATTC 117060 ||||| |||||||||||||| || | ||| || ||||||||||| |||||||| || || Sbjct 64797 TTCTCGAAGAAGTTGGTCTTTCCTTGAAGACTTATGTTTTCCATGAAGTCAAAGGGGTTG 64738 Query 117061 TTCGCGTTCCAAATGGGT-GGCACCCCAACTTGTTTGAGGAGACGATCCGACACATACTC 117119 | ||| | ||||| || |||| || ||||| || | ||| ||||| Sbjct 64737 CTGGCGC-CGTAATGGACCGGGTTTCCAAGCGAAACAAGCAGACGGTCAGCCACGTACTC 64679 Query 117120 AATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGAT-TACATGGGAGTGCGTCCA 117178 ||||||| | ||||| | |||||||| || || | | ||| ||||| ||||| Sbjct 64678 TATGTACTGGCACATCAATTTCGAGTTCATGCCAATCAAAGATACG-GGGAGAGCGTCGG 64620 Query 117179 AGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATAGTTTCGGTAG 117238 || ||| ||||||| || || || ||||| | | ||| | | | || || | | Sbjct 64619 TGAGGAAAGCTTTCTCGATTTCCACGGCCTCGGTGATGATTTTGAGCACGGTGTCCGG-G 64561 Query 117239 TGGG-TCTATTACGCAAAGTCT-TGAAGAGCTCCACGGCAAACTCCTGGTGGAGACCCTC 117296 || | || || | | || ||||||| |||||| || ||| ||||| || Sbjct 64560 TGCGCTCGCTT-CTTGAGGTGGCTGAAGAGGAGGCAGGCAAAGTCGGTGTGCAGACCTTC 64502 Query 117297 ATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCTTCAA 117356 || || || || || || || ||||| || || ||||||||||| |||||||| | Sbjct 64501 GTCACGCGAGATGAGCTCGTTGGAGAAAGTGAGACCGGGCATGAGACCACGCTTCTTGAG 64442 Query 117357 CCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACGCAAA 117416 ||| | || | | ||| || |||||||||||||||||||| ||| || || |||| Sbjct 64441 CCAGAAGATGGAGGCGAAGGAACCGGAGAAGAAGATACCCTCGACAGCGGCGAAGGCAAC 64382 Query 117417 AAGGCGCTCGGCGAAGGAG 117435 || ||||||||||| ||| Sbjct 64381 GAGACGCTCGGCGAAAGAG 64363 >seq2 Length=407147 Score = 96.9 bits (106), Expect = 4e-15 Identities = 228/343 (66%), Gaps = 11/343 (3%) Strand=Plus/Plus Query 169130 GAAACCC---AACTTGAGAAGACTGGGCCAGAAGTAGTGGATCATATTTAGGATGAGACC 169186 ||||||| | |||||| || || |||||| || || | || | ||||||||| Sbjct 60853 GAAACCCGGAATCTTGAGCAGCGACGGGTAGAAGTGGTCGAGGAAGTTGATGATGAGACC 60912 Query 169187 CTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACCATAGCGAA- 169245 ||||||||| ||||| || | ||| ||| ||||| ||||| | || || || || | Sbjct 60913 CTTGATGTGCGAACCGTCGTGATCCTGATCGGTCATGATCATGATACTGCCGTATCGCAG 60972 Query 169246 ---GTTCAGAAACATCTTGGTAGTCTTTTCCTTGTTGAAGACCCAAGATCTTCTTGAGAT 169302 |||| || || | || | || || || || ||||||||||||| ||||| Sbjct 60973 ACTGTTC----ACGTCGAGATACTGCTTGCCGTGCTGGAGACCCAAGATCTCCTTGATGG 61028 Query 169303 CGTTGAACTCTTGGTTTGATGTGAGCTGTGCCACTGAAGCGTCGCGGACATTCTTACACT 169362 | |||| || ||| ||| ||| | || || || ||||| ||| || Sbjct 61029 CTTTGATTTCGGCGTTCTTCATGATCTGGTCGTGCGAGGCTTCACGGACGTTCAAGAGCT 61088 Query 169363 TCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGCGACCG 169422 | |||||||| || ||||| ||||||| || | ||| || || | ||| ||||| | Sbjct 61089 TACCACGGAGCGGGAAGACACCATAGTTGTCTCTTCCGACCTCGACAATACCGGCGACAG 61148 Query 169423 CAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACA 169465 | || | || || || ||||| || |||| ||||| || || Sbjct 61149 CGAGCGACTTGGCGGAGTCACCTTCGGTGAGGATGAGTGTGCA 61191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589867140198880