Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq27 143 2e-29 seq18 116 2e-21 >seq27 Length=198227 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||| ||||| |||||||||||| ||||| |||| ||| Sbjct 160157 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTTCGTCCATCTTCC 160098 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | |||||| |||||||| || || || |||||||| |||| | ||||||||||| | Sbjct 160097 AACTGTTTACCGGCAAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGA 160038 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || || ||| || |||| ||| ||||| || Sbjct 160037 ATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTG 159978 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| ||||| || ||||||||||| Sbjct 159977 CCGGTGAGGGTCTTGACGAAGATCTGCAT 159949 Score = 125 bits (138), Expect = 5e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| || | ||| | ||||| || ||||||||||| ||||| ||||| | || |||| Sbjct 160617 CAACACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGGCCATC 160558 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || ||||| || |||||||| || ||||| |||||||| | || | || |||||||| Sbjct 160557 CTCGAGCTGCTTACCGGCAAAGATGAGTCGCTGCTGGTCAGGTGGGATACCTTCCTTGTC 160498 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 || ||| || ||| | |||| || || |||||| |||| || || || Sbjct 160497 CTGGATTTTCGCCTTTACGTTGTCGATCGTGTCCGAGGACTCAACCTCGAGAGTGATCGT 160438 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || |||||||| ||||||||||||||| Sbjct 160437 CTTTCCGGTCAGAGTCTTGACAAAGATCTGCATA 160404 Score = 107 bits (118), Expect = 1e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| || | ||| | ||| ||| ||||||||||| ||||| |||||| | || |||| Sbjct 160389 CAAGACAAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCATC 160330 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || || || ||||| || || || || ||||||||||| | || | ||||||||||| Sbjct 160329 CTCGAGTTGCTTTCCTGCGAAAATGAGACGTTGCTGGTCAGGGGGAATGCCCTCCTTGTC 160270 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| |||||| | || | || || ||||| |||| || ||||| Sbjct 160269 CTGGATCTTAGCCTTGACGTTGTCGATGGTGTCCGAGGATTCAACTTCGAGAGTGATGGT 160210 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || | ||||| ||||||||||||||| Sbjct 160209 CTTGCCGGTCAAGGTCTTGACAAAGATCTGCATA 160176 Score = 102 bits (112), Expect = 5e-17 Identities = 146/202 (72%), Gaps = 8/202 (4%) Strand=Plus/Minus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| || ||||||||||| |||||||| ||| | || | || |||| ||| || || Sbjct 160829 GTGCTCTCCTTCTGAATGTTGTAGTCCGACAGGGTACGACCGTCCTCCAACTGCTTACCA 160770 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 ||||| || | || |||||||| | || | ||||||||||| ||||| ||| Sbjct 160769 GCAAAGATCAAACGCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTTG 160710 Query 34905 ACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAG 34960 || || | || || | ||| | ||| || || | || ||||| ||||||||||| Sbjct 160709 AC--AT--TGTCAATGGTATCCGACGACTCGACCTCCAAAGTGATGGTCTTTCCCGTGAG 160654 Query 34961 AGTCTTCACAAAGATCTGCATA 34982 ||||| |||||||| |||||| Sbjct 160653 CGTCTTGACAAAGATTTGCATA 160632 >seq18 Length=238221 Score = 116 bits (128), Expect = 2e-21 Identities = 146/198 (74%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||||||||| | || | || || ||||| || ||||| || Sbjct 226407 TCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTACCGGCGAAG 226466 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || ||||| |||||||| | || | ||||||||||| ||||| ||||| Sbjct 226467 ATAAGTCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGAC---- 226522 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | | ||||| | ||| | ||| || |||| ||| ||||| || |||||||| ||||| Sbjct 226523 GTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTT 226582 Query 34967 CACAAAGATCTGCATATT 34984 |||||||||||||| || Sbjct 226583 AACAAAGATCTGCATCTT 226600 Score = 107 bits (118), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||||||||| | || | || || ||||| || |||||||| Sbjct 147255 TCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAG 147196 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || ||||| |||||||| | || | |||||||| || |||||| ||||| Sbjct 147195 ATAAGTCGCTGCTGGTCAGGTGGGATGCCCTCCTTATCTTGAATCTTGGCCTTGAC---- 147140 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | | ||||| | ||| | ||| || || | ||| ||||| || || ||||| ||||| Sbjct 147139 GTTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTT 147080 Query 34967 CACAAAGATCTGCAT 34981 || ||||||||||| Sbjct 147079 GACGAAGATCTGCAT 147065 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || || | || | || || ||||| || |||||||| Sbjct 147484 TTCCTTCTGGATGTTGTAGTCAGAGAGTGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAA 147425 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||| || | || | || |||||||| ||||| |||||| Sbjct 147424 GATGAGACGCTGCTGATCGGGTGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 147365 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || || ||| || |||| ||| || || || || || | |||||| || Sbjct 147364 GTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATCGTCTTGCCGGTCAAAGTCTTGAC 147305 Query 34970 AAAGATCTGCATA 34982 |||||||||||| Sbjct 147304 GAAGATCTGCATA 147292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324572622853536