Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq25 120 2e-22 >seq25 Length=198755 Score = 120 bits (132), Expect = 2e-22 Identities = 449/704 (64%), Gaps = 40/704 (6%) Strand=Plus/Minus Query 29709 GAAATCCTCTGCCTTAAAGTCGTCCAGGTTCTCCACCCTCCTGTTTATCCTCAGTGTGGG 29768 ||||||||| ||| || ||||| | | || | | ||| || || || || |||| Sbjct 54573 GAAATCCTCGTACTTGAAATCGTCGATATCCTTGATCTCCCTCTTGATGCTGAGCTTGGG 54514 Query 29769 AAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGAC 29828 || || || || ||||| ||||| ||||| ||| || ||||||||| ||| || Sbjct 54513 GAATGGCAACGGATCTCTCTCCAGCTGCACCTTCAACGGCTCGACGTGATCCTTGTACAC 54454 Query 29829 GTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCAT 29888 ||| || ||||||| || || |||||| ||| || | || || | || || Sbjct 54453 GTGCGCATCTCCCATGGCCAACACCAACTCTTTCGGCTCGCAATCCGTCACCTTGGCGAT 54394 Query 29889 CATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCC 29948 |||||| || | || | ||||| |||||||| || || || || || |||| || | Sbjct 54393 CATGTAGGTCAACAGCGCATAGCTCGCGATGTTGAACGGCACACCCAGACCCAAATCGCA 54334 Query 29949 CGACCTCTGGTAGAGCTGACACGAGAGCTCT------CCGTCGCTC-------------- 29988 || | |||||| | |||||| ||||| | | || |||| | Sbjct 54333 GGATCGCTGGTACATCTGACAGGAGAGGTGTTTCTTACCTTCGCCCTTGGCGTACGCGTC 54274 Query 29989 ----------ACGTAAAACTG---ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCC 30035 ||| | ||||| | ||||| ||||| || || ||||||||||| | Sbjct 54273 GAGGTTGGACACGAAGAACTGCGCAAACATG---TGGCAAGGGGGCAGAGCCATGAGTTC 54217 Query 30036 CAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30095 | || || |||||||| |||| | | |||||| | || |||||||| | ||| Sbjct 54216 GAGATCCTTCGGGTTCCATGCGCTGAGCAAGATGCGTCGATCGGTGGGGTTGTTGCGGAT 54157 Query 30096 GAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGC-CCTCATG 30153 ||| | | | || || ||||| || || || ||| | ||| ||||| | || | Sbjct 54156 CTTGTCGATGAC-TTGGGCGAGCTGGTCTACGCCTTGCCCTGTGTAATCTGCGTCGCA-G 54099 Query 30154 TCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCC 30213 || ||||| ||| || || || | ||| ||||| ||||| || || |||| ||| || Sbjct 54098 TCGGTGTAGGATGCGCCAAAGTGTCGCCATTGGAAGCCGTAGACGGGGCCCAAGTCGCCT 54039 Query 30214 TCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAG 30273 || | ||| || ||| | ||| | || || | || ||||| ||||||| Sbjct 54038 TCACGGCGGTGGGAGAGGCCACGAGAGTCGAGGAATTCGCGCGATCCGTTACCGTCCCAA 53979 Query 30274 ATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGC 30333 || | || ||||| || | |||| || || | || || |||||||| || Sbjct 53978 ATATGAACTCCCTTGTCCGTGAGCAGCTTCGAATCGGTCTTGCCAGCTACGAACCAGAGA 53919 Query 30334 AGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG 30377 |||||||||| || | | ||||||| || |||||||| Sbjct 53918 AGCTCCTCCAGCACTCCGCGGAAGAAGACCCGTTTCGTCGTGAG 53875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408540847823876