Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq141 325 7e-84 seq75 226 5e-54 >seq141 Length=34748 Score = 325 bits (360), Expect = 7e-84 Identities = 875/1323 (66%), Gaps = 39/1323 (3%) Strand=Plus/Minus Query 221370 CGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGGGCAGCGT 221429 |||| | |||||||| |||| | | ||| | |||| || || ||||| |||| Sbjct 30855 CGTAGGTCTCGTAGGTGCCGTGCTCCTGAGCCAGCTCGCACGATCGCTCGAGGGCGGCGT 30796 Query 221430 GGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAAGGGCA 221489 ||||||||||||| |||||| |||||| | |||||||| || ||| | | Sbjct 30795 GGTAGATGGTCTCGAAGATCTGGACGTTGAGACGACGAGCCTCGGGCGACTCGAAAG-CG 30737 Query 221490 TA-CGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGT 221548 || | || ||| ||| ||||||| || ||||| || |||||||||||||| | || Sbjct 30736 TAGCCCATGATCATGAAGGCGTCGGCGAGACCCTGGACACCGATACCGATGGGACGATGG 30677 Query 221549 CTCCTGTTGGAA--GCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGT 221606 | | ||||||| ||| | || || | ||||| || |||||| |||||| | |||| Sbjct 30676 CGCATGTTGGACCTGCGAGC-CTCCTCG-ACGGGGTAGTAGTTGATGTCGATGATCTTGT 30619 Query 221607 TGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA---TTGAACACCA 221663 |||||||| |||| | || | |||||| ||| || ||||| Sbjct 30618 TGAGGTTCTTGCAGATGGCCTTGGCGACCTCG---------TGGAGACGCTTGAAG---- 30572 Query 221664 ACTCGCCGCCGTCGTGGAG--GGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTT 221721 ||| | ||| ||| | ||| || | || | | ||||| | | |||| ||| Sbjct 30571 --TCGTAG--GTCTTGGTGACGGGGTCGATGAAGGTGGGGAGGGCGATGGAAGCCAAGTT 30516 Query 221722 ACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCA 221781 || ||||| |||||||| | | |||| |||||||| || || | |||| ||| Sbjct 30515 GCAGACGGCGACCTCGTCGGGGGCACTGTACTCGATGATCTCGGTGCACAAGTTGGAGCA 30456 Query 221782 CTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCAT 221841 ||||||||| || |||| || || || |||||| |||||||||||||||||||| || Sbjct 30455 CTTGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCGTCCTTGTAGAGGAT 30396 Query 221842 AAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGC 221900 ||||| |||||||| ||| | | | || || || |||||| | |||| || Sbjct 30395 GAAGGGGTTACCAGTCTCGGTCTGGGACTCGAGGATGGCGTACCAGAGCT-TCTGAGCCT 30337 Query 221901 TCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACT 221960 | || || | |||| | ||||||| | || || | ||||| || |||| Sbjct 30336 TGACAGTGCGCTTGGCACGGCCCTCGGCC---TCGTAGCGCTCGTAGAGACGCTCGAACT 30280 Query 221961 TTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCT 222020 || ||||| ||| | || || || ||| | ||| ||||| || ||||| Sbjct 30279 CGTCGCCGTAGCAGTCGGCGAGACCGGGGCACTCGTTGGGGCACATGAGGGACCAGTCAC 30220 Query 222021 TGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTC 222080 ||| | | ||| | || ||||||||| || || | ||| || || | ||||| || | Sbjct 30219 CGTTCTGCTCGACACGCTTCATGAAGAGATCGGGAACCCAGAGGGCGTAGAAGAGCTCAC 30160 Query 222081 TGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAG 222140 | || ||||||| |||| ||| || | || || | |||||||| | ||| | Sbjct 30159 GAGCACGAACCTCCTCCTTACCGTGGTTCTTGCGGAGGTCGAGGAACTCAAAGACGTCCG 30100 Query 222141 CGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCA 222200 |||||| ||||| | |||| ||| | || ||||| ||||||||||||||||| || | Sbjct 30099 AGTGCCATGGCTCAATGTAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGA 30040 Query 222201 CCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGT 222260 | | | |||||||| ||| || | || || | |||||| ||||| Sbjct 30039 CGTAGCGGGCGGTGTTGTTGAAGACGCGGAGCATGGGAACGATACCGTTGCTAACACCGT 29980 Query 222261 TGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAG-ACATGCCGATACCA 222319 ||||||| |||||| | || | | | | | | ||| | | ||||||||| Sbjct 29979 TGGTGCCGGCAATGTAGGAGCCAGTGCCACGGATG-CAGTGGATGTTGAGACCGATACCA 29921 Query 222320 CCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAG 222379 |||||| || ||||||||||||||| ||||||| ||||| |||||| || || ||| Sbjct 29920 CCGGCGGTCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGATGCCGTCGATGGAG 29861 Query 222380 TCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTA 222439 || ||||| | | | | || ||||| ||||| | ||| | | | || || |||||| Sbjct 29860 TCGTCCTTCATGGTGACGAGGAAACACGACGAGAGCTGCGGGTGAGGGGTACCGGCGTTG 29801 Query 222440 AACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACG 222499 || || ||||| |||||| |||||||| ||||| || | ||| ||||| | | Sbjct 29800 AAGAGGGTGGGCGAGGCGTGGGTAAAGTACTTTTGCGACATGAGGTTGTAGGTCTCGATG 29741 Query 222500 ACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGC 222559 | |||||||||| | ||||| || | |||| | |||| ||||| |||||| Sbjct 29740 GCGCTGGCGATGTCCTGACCGTGGATACCGACGGCGACACGCATGAGCATGTGCTGGGGA 29681 Query 222560 CTCTCCACAGGACCCT--TGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAACC 222617 | ||| | |||| | | | || ||| ||||| || || || |||||||| | Sbjct 29680 CGCTCTGC--GACCTTGCCGTTGATGCGGAGGAGGTAGGAGCGCTCGAGGGTCTTGAAGC 29623 Query 222618 CAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCAGCTCCGACTTGT 222677 | ||| ||||| || ||||| | ||| | | ||| | ||| |||| ||||| Sbjct 29622 CGAAGAAGTTGTAGTGGAAGTCACGCTCGTAGATGATGGCCGAGTCGAGCTGGTCCTTGT 29563 Query 222678 GCT 222680 ||| Sbjct 29562 GCT 29560 >seq75 Length=98333 Score = 226 bits (250), Expect = 5e-54 Identities = 563/850 (66%), Gaps = 34/850 (4%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| | || |||||||||||| || || || || Sbjct 63971 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAAATCGACCTC 64030 Query 25537 GCCAAGGACATGGACGGCTGGTAC-----GCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 ||||||| | ||| |||| || |||| | | | |||||| || || || Sbjct 64031 TCCAAGGATCTCCACGACTGGGACAACAAGCTCAA--CGACAACGAGCGTCACTTCATCT 64088 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 |||| | || ||||| || ||||| || ||||| || |||||||| || |||| Sbjct 64089 CCCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGTATCGTCAACGAGAACCTTGTCGAGC 64148 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 | |||| | ||||| ||| || |||||| || ||||||||||||||||| | Sbjct 64149 GTTTCAGCTCTGAAGTTCAGGCCGCCGAGGCCCGTTGCTTCTACGGTTTCCAGATCATGA 64208 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACG 25768 | || || | ||||| ||| || | ||| || || || ||||| || Sbjct 64209 TGGAGAACATCCACTCGGAGACCTACTC---GCTCCTCATCGACACCTACATCCGTGAGC 64265 Query 25769 TCG--CCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAA 25826 || | | | ||| || || |||| ||| ||||| ||| ||| | ||||| ||| Sbjct 64266 CCGAGCAGCGCGAGTTC--CTCTTTGACGCCGTCGAGACCATCCCCGTCGTCAAGCAGAA 64323 Query 25827 GGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGT 25886 ||| ||||| | ||||||| | | || |||| | || | |||||| || || Sbjct 64324 GGCTGACTGGGCTCTCCGATGGATCAGCGACAAGCGCGCCTCTTTCGCCGAGCGTCTCGT 64383 Query 25887 AGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCT 25946 ||||| || ||||| ||||| ||||| ||| |||||| || || ||||||||||||| Sbjct 64384 TGCCTTCGCCGCTGTCGAGGGTATCTTCTTCTCCGGTTCCTTCGCCTCCATCTTCTGGCT 64443 Query 25947 CAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGACG 26005 |||| || || ||||||||| || ||||| ||||||||||||||| | |||| Sbjct 64444 CAAGAAGCGTGGTCTCATGCCCGGTCT-CACTTTCTCCAACGAGCTCATCTCGCGTGACG 64502 Query 26006 AGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTT 26065 | ||||| |||| || ||||||||||| |||| || ||||| ||| | || | Sbjct 64503 AAGGTCTGCACACCGACTTTGCCTGCCTCCTCTTCA---GCCAC---CTCAAGAAGCGAG 64556 Query 26066 CTCA---AGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTC 26122 | || || ||||| || ||||||| ||||| ||||| |||||||| | || | Sbjct 64557 CGCACCCGGACACCGTGCTCAAAATCATCACCGAGGCCGTGGAAATCGAGAAAGCTTTCC 64616 Query 26123 NNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACA 26182 | ||||||||| | | | ||| |||| |||| Sbjct 64617 TCACCGACGCTCTCCCCGTATCTTTGATTGGCATGAACTCGAAATTGATGTGCCAGTACA 64676 Query 26183 TTGAGTATGTGGCCGACCATCTGC-TGTGCCAGCTGGGACTCGCCAGACTCTACAGTACG 26241 | ||||| ||||| |||| ||||| ||| | ||| ||| | | | ||| | || Sbjct 64677 TAGAGTACGTGGCTGACCGTCTGCTTGTTTC-GCTTGGAAACCCGGTCCATTACGG--CG 64733 Query 26242 CC--TAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTG 26299 || ||||| || ||||| |||||||||||| | |||| |||||||||||||| | Sbjct 64734 CCAGCAACCCCTTTGACTTCATGGAAAACATAAGTCTTCAAGGAAAGACCAACTTCTTCG 64793 Query 26300 AAAAGAGGGT 26309 | || | ||| Sbjct 64794 AGAAAAAGGT 64803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928665858049280