Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq75 96.9 1e-14 seq6 89.7 2e-12 >seq75 Length=98333 Score = 96.9 bits (106), Expect = 1e-14 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 133452 AGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTC 133511 |||| ||||||||||| | ||||||| |||||||| || ||| || |||| Sbjct 64320 AGAAGGCTGACTGGGCTCTCCGATGGATCAGCGACAAGCGCGCCTCTTTCGCCGAGCGTC 64379 Query 133512 TCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTT 133571 ||||||| || || | || ||||| || || ||| ||| | ||| ||| || || | Sbjct 64380 TCGTTGCCTTCGCCGCTGTCGAGGGTATCTTCTTCTCCGGTTCCTTCGCCTCCATCTTCT 64439 Query 133572 GGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGG 133631 |||| || ||||||||| | | || || || ||| || ||||| || || || | | Sbjct 64440 GGCTCAAGAAGCGTGGTCTCATGCCCGGTCTCACTTTCTCCAACGAGCTCATCTCGCGTG 64499 Query 133632 ACGAGGCACTTCACACCGAATTTGCC 133657 |||| | || |||||||| |||||| Sbjct 64500 ACGAAGGTCTGCACACCGACTTTGCC 64525 >seq6 Length=350643 Score = 89.7 bits (98), Expect = 2e-12 Identities = 180/265 (68%), Gaps = 8/265 (3%) Strand=Plus/Minus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| | |||||||||||| ||||| || | || || ||||| || || || || Sbjct 331485 CTTGACCAGACGACGCTGAATGTAACCGGTCTCGGCAGTCTTGACAGCCGTGTCGATGAG 331426 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAA 302702 ||| | ||||| |||| || |||||||| | ||| | || || || | | | Sbjct 331425 ACCTTCTCGACCGGCCATGGCGTGGAAGAAGAACTCCTGCGCAGTGAGACCTCGCAGGTA 331366 Query 302703 GGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAG 302762 ||| |||| ||||||||||| |||||| | |||| |||||| || || ||||| Sbjct 331365 CGAGTTCTCGACGAAACCACGACTCTCGGGGGTGAAGTCGTCCTTGGTGAAATGGGGCAG 331306 Query 302763 GGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCC----CA 302818 | | || | ||| |||| |||||||| || || ||| |||||| || || Sbjct 331305 ACTGCGGTGGCGGAAACCGAATGGAATACGCTTACCCTCGACGGACTGCTGACCGACACA 331246 Query 302819 GGCACGAAATCATCTGCGAAATATT 302843 ||| ||| ||||||||| || || Sbjct 331245 GGC-CGA---CATCTGCGAGATGTT 331225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471526965697844