Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq141 167 2e-36 seq27 116 3e-21 seq18 107 2e-18 seq3372 82.4 7e-11 >seq141 Length=34748 Score = 167 bits (184), Expect = 2e-36 Identities = 969/1525 (64%), Gaps = 44/1525 (3%) Strand=Plus/Minus Query 138501 GTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGG 138560 ||| | |||||| || |||||||| | || ||||| ||| || ||| |||| |||| Sbjct 31100 GTTGACGACCTGGAACTCACCGGCGAGCACACGACGCGAGTAGATATTGGAGGTGTAAGG 31041 Query 138561 CTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCAC 138620 ||| || | |||||| ||||| |||||| |||| || || |||||| || | Sbjct 31040 CTCGAAGCACTCGTTGAAGCCCAGGATCTGACTGGTGGAGGCAGTAGGCATGGGAGCGAG 30981 Query 138621 CAAAAGAGAATTCCGTAAACCGTGAAGCTTGAT--TCGTT-CCTTGAGCGACGACCAGTC 138677 | || || || || | |||||| |||| || | |||||||| | |||||| Sbjct 30980 GAGGAGCGAGTTGCGAAGACCGTG---CTTGGCGATCTTGGCCTTGAGCTCGGCCCAGTC 30924 Query 138678 CCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGG 138737 ||| | | || | |||||| |||||||| | | ||| ||||| Sbjct 30923 CCAAAGGTTCGAGGGGGTGACACCCCACATGTCGTACTGGAGCTCACCCTGGGAAGCGGG 30864 Query 138738 ACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTT-GCTCGCCTCGA 138796 ||| |||| | ||||| || ||| || |||| |||| | |||| |||| Sbjct 30863 CGAGCCGGCGTAGGTCTCGTAGGTGCCGTGCTCCTGAGCCAGCTCGCACGATCGC-TCGA 30805 Query 138797 GCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCT 138856 | || | | ||| || || ||| ||||| ||||| || ||||||| || Sbjct 30804 GGGCGGCGTGGTAGATGGTCTCGAAGATCTGGACGTTGAGACGACGAGCCTCGGGCGACT 30745 Query 138857 CGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAG 138916 || | | || | ||| |||| |||||||| || || || || || | |||| | Sbjct 30744 CGAAAGCGTAGCCCATGATCATGAAGGCGTCGGCGAGACCCTGGACACCGATACCGATGG 30685 Query 138917 GGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATCGATGA 138976 | |||||||||| || ||| || | |||| || || ||||| | ||||||| Sbjct 30684 GACGATGGCGCATGTTGGACCTGCGAGCCTCCTCGACGGGGTAGTAGTTGATGTCGATGA 30625 Query 138977 TTTTGTTTAAATT-TCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTAT 139035 | ||||| | || | ||| || |||| | | | | || | || ||||| Sbjct 30624 TCTTGTTGAGGTTCTTGCA-GATGGCCTTGGCGACCTCGTGGAGACGCTTGAAGTCGTAG 30566 Query 139036 GTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTG 139095 || ||| || |||| ||||| || || || || || || | |||| Sbjct 30565 GTC------TTG--GT-GACGGGGTCGATGAAGGTGGGGAGGGCGATGGAAGCCAAGTTG 30515 Query 139096 CACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACAC 139155 || || || || ||||||||| | ||||| |||| || |||| ||||| || ||| Sbjct 30514 CAGACGGCGACCTCGTCGGGGGCACTGTACTCGATGATCTCGGTGCACAAGTTGGAGCAC 30455 Query 139156 TTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATA 139215 ||||| || || | || | || ||||| || ||||| ||| || ||||| || || Sbjct 30454 TTGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCGTCCTTGTAGAGGATG 30395 Query 139216 TACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGC-TTG 139274 | || | ||||| || || | ||| | ||| | | | | | ||| ||| Sbjct 30394 AAGGGGTTACCAGTCTCGGTCTGGGACTCGAGGATGGCGTACCAGAGCTTCTGAGCCTTG 30335 Query 139275 TATTTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAA-TCGTT 139333 || ||| | | | | ||| |||||| |||||||| ||||| |||| Sbjct 30334 ACAGTG-CGCTTGGCACGGCCCTCGGCCTCGTAGCGCTCGTAGAGACGCTCGAACTCGT- 30277 Query 139334 CACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGT 139393 | |||||| ||| | ||| || | |||| || || |||||||| ||||| | |||| Sbjct 30276 CGCCGTAGCAGTCGGCGAGACCGGGGCACTCGTTGGGGCACATGAGGGACCAGTCACCGT 30217 Query 139394 TCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCG 139453 || || ||| ||| ||||||| ||||| |||| ||| | ||| | | | || || | Sbjct 30216 TCTGCTCGACACGCTTCATGAAGAGATCGGGAACCCAGAGGGCGTAGAAGAGCTCACGAG 30157 Query 139454 CCTTCTTATCTTCCGAACCCATGTTACGTTTC--ATGTTAAGGAAATCAAAAACGTCAGC 139511 | || ||| ||| ||| || | | || ||||| ||||| ||||| | Sbjct 30156 CACGAACCTCCTCCTTACCGTGGTTC--TTGCGGAGGTCGAGGAACTCAAAGACGTCCGA 30099 Query 139512 GTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTG---CCACCTTGATCGAC 139568 ||||||||| || | |||||||| | || || || ||| ||||| || ||||| Sbjct 30098 GTGCCATGGCTCAATGTAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGAC 30039 Query 139569 GTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTT-CCGT 139627 || || | | || ||||| ||||| | ||| || | | |||| | ||| |||| Sbjct 30038 GTAGCGGGCGGTGTTGTTGAAGACGCGGAGCATGGGAACGATACCGTT-GCTAACACCGT 29980 Query 139628 TGGTGCTACGG--ATG--GGA-CTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGAT 139682 |||||| ||| ||| ||| | ||| | |||| | || | |||| ||||| Sbjct 29979 TGGTGC--CGGCAATGTAGGAGCCAGTGCCA---CGGATGCAGTGGATGTTGAGACCGAT 29925 Query 139683 TCCGCCGCCAAATTTGGATATTAAAACGCAA-TCGCGTAATGTCTCGTATATACCTCTTA 139741 || ||| | ||||| || | |||| || | | || ||||| || || | Sbjct 29924 ACCACCGGCGGTCTTGGAGATCATGGCGCAGGTCTTG-AGCGTGTCGTAGATGCCGTCGA 29866 Query 139742 TGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGG 139801 || |||||||| ||| ||||| || || || ||||| || ||||| | || |||| Sbjct 29865 TGGAGTCGTCCTTCATGGTGACGAGGAAACACGACGAGAGCTGCGGGTGAGGGGTACCGG 29806 Query 139802 CTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTT 139861 | || || || || ||||| || || | || |||||| | | ||| || | Sbjct 29805 CGTTGAAGAGGGTGGGCGAGGCGTGGGTAAAGTACTTTTGCGACATGAGGTTGTAGGTCT 29746 Query 139862 CGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTT 139921 |||||||||| | || ||| |||||||||||||| | ||| ||||| ||||| || | Sbjct 29745 CGATGGCGCTGGCGATGTCCTGACCGTGGATACCGACGGCGACACGCATGAGCATGTGCT 29686 Query 139922 GGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTCTCTAGGGTCTTGT 139981 || || || || ||| ||| | ||| || || | ||| ||||||||| Sbjct 29685 GGGGACGCTCTGCGACCTTGCCGTTGATGCGGAGGAGGTAGGAGCGCTCGAGGGTCTTGA 29626 Query 139982 AGCCAAAGTACCTATAGTTGAAATC 140006 |||| ||| | | |||| ||| || Sbjct 29625 AGCCGAAGAAGTTGTAGTGGAAGTC 29601 >seq27 Length=198227 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || ||||| || || || || Sbjct 159949 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCC 160008 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || || ||||| || Sbjct 160009 GACACCATTGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAG 160068 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||||||||| |||||| |||| ||| ||| | | || || || ||| Sbjct 160069 CAGCGTCTCATCTTTGCCGGTAAACAGTTGGAAGATGGACGAACCCTTTCGGACTACAAC 160128 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| || || || |||||||| Sbjct 160129 ATCCAGAAGGAGTCCACCCTCCACTTGGT 160157 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | ||||| || || || || |||||||| ||| || | Sbjct 160177 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACTCTCGAAGTTGAATCCTCG 160236 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 160237 GACACCATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAG 160296 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | || || || || || || || |||||| | | | | || || || ||| Sbjct 160297 CAACGTCTCATTTTCGCAGGAAAGCAACTCGAGGATGGCCGCACCCTTTCCGACTACAAC 160356 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| |||||||| || || ||| | || |||||| | || || || Sbjct 160357 ATTCAGAAGGAATCCACTCTCCACCTTGTCTTGCGACTTCGTGGTGG 160403 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || || ||||| || || || | Sbjct 160405 ATGCAGATCTTTGTCAAGACTCTGACCGGAAAGACGATCACTCTCGAGGTTGAGTCCTCG 160464 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| || ||||| ||||| ||||| || || || || || Sbjct 160465 GACACGATCGACAACGTAAAGGCGAAAATCCAGGACAAGGAAGGTATCCCACCTGACCAG 160524 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||||||||| || ||||| |||||| | | | || || || ||| Sbjct 160525 CAGCGACTCATCTTTGCCGGTAAGCAGCTCGAGGATGGCCGTACTCTTTCCGACTACAAC 160584 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || | ||| | ||||||||| | ||||| || Sbjct 160585 ATTCAGAAGGAGAGCACCTTGCACCTCGTGTTGCGACTCCGCGGTGG 160631 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || ||||| || || || || || || | || || || | | Sbjct 160633 ATGCAAATCTTTGTCAAGACGCTCACGGGAAAGACCATCACTTTGGAGGTCGAGTCGTCG 160692 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||||| || || || || ||||| || Sbjct 160693 GATACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAG 160752 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || |||||||||||||| || || ||| ||||||| | | | |||| || || ||| Sbjct 160753 CAGCGTTTGATCTTTGCTGGTAAGCAGTTGGAGGACGGTCGTACCCTGTCGGACTACAAC 160812 Query 24884 ATTCAAAAGGA 24894 ||||| ||||| Sbjct 160813 ATTCAGAAGGA 160823 >seq18 Length=238221 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | ||||| || || || || ||||| || || || | Sbjct 147293 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACGATCACCCTCGAGGTCGAGTCCTCG 147352 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || || |||||||| Sbjct 147353 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCACCCGATCAG 147412 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||||||||| || ||||| ||||| | | | || || || ||| Sbjct 147413 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACACTCTCTGACTACAAC 147472 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 || || ||||||||||| || || | || | || |||| || |||| Sbjct 147473 ATCCAGAAGGAATCGACGCTTCATCTCGTCCTCCGTCTGCGTGGTGGCG 147521 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| |||| || || || ||||| || || || ||||| || || | | Sbjct 226598 GATGCAGATCTTTGTTAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTGGAGTCTTC 226539 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| || ||||| || || || || Sbjct 226538 GGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGACCA 226479 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | ||||| ||||| || ||||| ||||| | | | | || || || || Sbjct 226478 GCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGTACCCTTTCGGACTACAA 226419 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| ||||| || ||| | ||| | || |||| || || Sbjct 226418 CATCCAGAAGGAGTCGACCCTTCACCTCGTGCTCCGCCTGCGTGGTGG 226371 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || ||||| || || || || || || || || | | Sbjct 147064 GATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTC 147123 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||| ||||| || || || || || || || || Sbjct 147124 GGACACCATCGACAACGTCAAGGCCAAGATTCAAGATAAGGAGGGCATCCCACCTGACCA 147183 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | ||||||||||| || ||||| ||||| | | | | || || || || Sbjct 147184 GCAGCGACTTATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTTTCGGACTACAA 147243 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| ||||| || ||| | ||| | || |||| || || Sbjct 147244 CATCCAGAAGGAGTCGACTCTTCACCTCGTGCTCCGCCTGCGTGGTGG 147291 >seq3372 Length=309 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || || || || || || | || Sbjct 170 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACGATCACCCTTGAGGTGGAGTCTTCC 111 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 110 GACACAATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAG 51 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || ||| | |||||||| || || ||||| || || Sbjct 50 CAGCGTCTCATCTTTGCTGGTAAGCAGCTTGAAGA 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449810927227360