Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq18 113 9e-20 seq27 111 3e-19 seq3372 100 6e-16 >seq18 Length=238221 Score = 113 bits (124), Expect = 9e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || | || || || ||||| ||||| || || || ||||| Sbjct 147519 CCACCACGCAGACGGAGGACGAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCAGAG 147460 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || || || || || |||||||| || | || ||||| || || Sbjct 147459 AGTGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCGGGTGGG 147400 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| || || || || || || || || | || || Sbjct 147399 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACC 147340 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || ||||||||||| ||||| ||||| || || |||||||| Sbjct 147339 TCGAGGGTGATCGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 147293 Score = 111 bits (122), Expect = 3e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || || || || | ||| ||||| || || ||||| || || || || | Sbjct 147293 TACCACCACGCAGGCGGAGCACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCCG 147234 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||||| || || || || || |||||||| |||| || || || || | Sbjct 147233 AAAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCAGGTG 147174 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||||||||||||||| || || || || || || || || || || | Sbjct 147173 GGATGCCCTCCTTATCTTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCA 147114 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || |||||||| || | ||||| || || |||||||| Sbjct 147113 CCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 147065 >seq27 Length=198227 Score = 111 bits (122), Expect = 3e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| || || | ||||| ||| || ||||| || || || || | Sbjct 160861 TACCGCCACGCAGACGGAGGACAAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCCG 160802 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | |||||| || | || || ||||||||||| | | || || || || | Sbjct 160801 ACAGGGTACGACCGTCCTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCGGGTG 160742 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| || || ||||| ||||| ||||| | || | Sbjct 160741 GGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTATCCGACGACTCGA 160682 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||||||| || ||||| || || | |||||| ||||| || ||||| Sbjct 160681 CCTCCAAAGTGATGGTCTTTCCCGTGAGCGTCTTGACAAAGATTTGCAT 160633 >seq3372 Length=309 Score = 100 bits (110), Expect = 6e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 |||||||| || || || ||||||||||| || | || || || || || || || ||| Sbjct 13 CCGTCTTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGGGGGATACCCTCC 72 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 || || || ||||| || || ||||| || || || || || || || || | || Sbjct 73 TTGTCCTGGATCTTGGCCTTGACATTGTCGATTGTGTCGGAAGACTCCACCTCAAGGGTG 132 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||||| |||| ||||| ||||| |||||||| Sbjct 133 ATCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981633322264668