Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq141 187 2e-42 seq27 82.4 7e-11 >seq141 Length=34748 Score = 187 bits (206), Expect = 2e-42 Identities = 987/1543 (64%), Gaps = 51/1543 (3%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCT-GAGATACACATTGCTAGTGAAAGG 146951 ||||| || || ||||| || || |||||||| | ||| || | |||| ||| |||| Sbjct 31099 TTGACGACCTGGAACTCACCGGCGAGCACACGACGCGAG-TAGATATTGGAGGTGTAAGG 31041 Query 146952 CTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCAC 147011 ||| || |||| || ||| | || || |||| || ||||||||| || | Sbjct 31040 CTCGAAGCACTCGTTGAAGCCCAGGATCTGACTGGTGGAGGCAGTAGGCATGGGAGCGAG 30981 Query 147012 CAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTG--CCAGTCC 147069 | | || || || ||||||| | ||| ||| |||| | | | | ||||||| Sbjct 30980 GAGGAGCGAGTTGCGAAGACCGTGCTTGGCGATCTTGGCCTTGA--GCTCGGCCCAGTCC 30923 Query 147070 CACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGA 147129 || | |||||| || || ||||||||||||||||||| | || | ||||| Sbjct 30922 CAAAGGTTCGAGGGGGTGACACCCCACATGTCGTACTGGAGCTCACCCTGGGAAGCGGGC 30863 Query 147130 CTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGC 147189 ||| ||| | || |||| | |||| ||| |||| || || | |||||| Sbjct 30862 GAGCCGGCGTAGGTCTCGTAGGTGCCGTGCTCCTGAGCCAGCTCGCACGATCGCTCGAGG 30803 Query 147190 GCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAG--GACGGTCGCTTCTTCGCTCT 147247 || | | ||| ||||| ||| ||| || ||| || |||| | || || || Sbjct 30802 GCGGCGTGGTAGATGGTCTCGAAGATCTGGACGTTGAGACGACGAGC-CTCGGGCGA-CT 30745 Query 147248 CGTAAGGCATA-CGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATA 147306 || ||| | || | || | || ||||| ||||| | |||||||| ||||| ||||| Sbjct 30744 CGAAAG-CGTAGCCCATGATCATGAAGGCGTCGGCGAGACCCTGGACACCGATACCGATG 30686 Query 147307 GGTCGATGCTTTTCGTTG---CTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCA 147363 || ||||| |||| ||||| | | |||| | ||| |||| |||| || Sbjct 30685 GGACGATGGCGCATGTTGGACCTGCGAGCCTC-CTCG--ACGGGGTAGTAGTTGATGTCG 30629 Query 147364 ATAATCTTGTTGAGGTTAC-GCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATC 147422 || |||||||||||||| ||| | | || | | | ||| || ||| || Sbjct 30628 ATGATCTTGTTGAGGTTCTTGCAG-ATGGCCTTGGCGACCTCGTGGAGACGCTTGAAGTC 30570 Query 147423 ATAAGTCCCGTCTTCGACACGTACGCATT--GGTTC--ACGGCGATAGACGCCAGATTGC 147478 || ||| | ||| | || || ||| | |||||| || |||| |||| Sbjct 30569 GTAGGTCTTGGT---GACGGGGTCG-ATGAAGGTGGGGAGGGCGATGGAAGCCAAGTTGC 30514 Query 147479 AGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATT 147538 ||||||| ||| |||| | | ||||||| | ||| |||| ||||| |||| ||| | Sbjct 30513 AGACGGCGACCTCGTCGGGGGCACTGTACTCGATGATCTCGGTGCACAAGTTGGAGCACT 30454 Query 147539 TTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGT 147598 | ||| || | || | ||| ||||| || || ||| ||||| ||| |||| ||| Sbjct 30453 TGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCGTCCTTGTAGAGGATGA 30394 Query 147599 ACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATGC-AGGTCCTGCGCTCGC 147657 | || || |||||| || | || | ||| | || || | ||| || Sbjct 30393 AGGGGTTACCAGTCTCGGTCTGGGACTCGAGGATGG-CGTACCAGAGCTTCTGAGCCTTG 30335 Query 147658 ACCCGCTGCCGATAGC--GGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGT 147715 || ||| | || |||||||| ||||| |||||||| | ||||| ||||||| Sbjct 30334 ACAG--TGCGCTTGGCACGGCCCTCGGCCTCGTAGCGCTCGTAGAGACGCTCGAACTCGT 30277 Query 147716 CGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGT 147775 |||||||||| ||||| || ||||| |||| | || ||||| || ||||| ||| Sbjct 30276 CGCCGTAGCAGTCGGCGAGACCGGGGCACTCGTTGGGGCACATGAGGGACCAGTCACCGT 30217 Query 147776 CCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCG 147835 | | || || ||| || ||||| || ||||| || ||||| | || || || | Sbjct 30216 TCTGCTCGACACGCTTCATGAAGAGATCGGGAACCCAGAGGGCGTAGAAGAGCTCACGAG 30157 Query 147836 CTTTGCAATCCTCGGCGC--CCATGTTGCGTTTCAAATT--AAGCACGCTATAGATGTCG 147891 | | | |||| | || || | | | | | | | || | | ||| ||| Sbjct 30156 CA---CGAACCTCCTCCTTACCGTGGTTCTTGCGGAGGTCGAGGAACTCAA-AGACGTCC 30101 Query 147892 GCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---CCGCCCTGGTCG 147948 | |||||| || |||||||||| ||| | ||||| |||||| || ||||||||| Sbjct 30100 GAGTGCCATGGCTCAATGTAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCG 30041 Query 147949 ACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCG 148008 || | ||| | ||||||| || ||||| | |||||| | | ||| | | ||| Sbjct 30040 ACGTAGCGGGCGGTGTTGTTGAAGACGCGGAGCATGGGAACGATACCGTTGCTAACACCG 29981 Query 148009 TTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCG 148068 |||||| || | | ||| | | || | ||| | ||| | || || || Sbjct 29980 TTGGTGCCGGCAATGTAGGAGCCAGTGCCACGGATGCAGTGGATGTTGAGACCGATACCA 29921 Query 148069 CCGCCGTACTTTGATATGGCAGCGCAA---TCGCCCAATGTCGTGTAGATGCCGTCGATG 148125 ||| || ||| || || ||||| | | | |||||| |||||||||||||| Sbjct 29920 CCGGCGGTCTTGGAGATCATGGCGCAGGTCTTGAGCG-TGTCGT--AGATGCCGTCGATG 29864 Query 148126 CTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCC 148185 ||||| || | | | | |||||||| | | ||||| | || || || Sbjct 29863 GAGTCGTCCTTCATGGTGACGAGGAAACACGACGAGAGCTGCGGGTGAGGGGTACCGGCG 29804 Query 148186 GAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCA 148245 ||| |||||||| ||||| ||||| | ||||| ||| | | || ||||| Sbjct 29803 TTGAAGAGGGTGGGCGAGGCGTGGGTAAAGTACTTTTGCGACATGAGGTTGTAGGTCTCG 29744 Query 148246 ATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGT 148305 || ||| ||||||| | ||||| || || | ||||| ||||||||||||||||| Sbjct 29743 ATGGCGCTGGCGATGTCCTGACCGTGGATACCGACGGCGACACGCATGAGCATGTGCTGG 29684 Query 148306 GGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAA 148365 || || || || || | |||||| ||| || || |||||||| ||| | Sbjct 29683 GGACGCTCTGCGACCTTGCCGTTGATGCGGAGGAGGTAGGAGCGCTCGAGGGTCTTGAAG 29624 Query 148366 CCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 || ||| | ||||| | || || ||||||| |||||||| Sbjct 29623 CCGAAGAAGTTGTAGTGGAAGTCACGCTCGTAGATGATGGCCG 29581 >seq27 Length=198227 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| || || ||||||||||| | ||| || |||||| Sbjct 160157 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTTCGTCCATCTTCC 160098 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | ||||||||||| | |||| |||||||| || || || || ||||| || || || | Sbjct 160097 AACTGTTTACCGGCAAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGA 160038 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || || | | || | || |||| | ||| || |||| || | || || Sbjct 160037 ATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTG 159978 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || || || || | ||| ||||||||| Sbjct 159977 CCGGTGAGGGTCTTGACGAAGATCTGCATG 159948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476519380852320