Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq75 260 2e-63 seq141 181 2e-39 seq13 118 2e-20 seq6 91.5 2e-12 >seq75 Length=98333 Score = 260 bits (288), Expect = 2e-63 Identities = 373/514 (73%), Gaps = 26/514 (5%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||||||||| ||||| |||||||||||||| |||||| Sbjct 63970 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAAATCGACC 64028 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTC 1455887 || | || |||| |||||| ||| | |||| ||||||| || ||| Sbjct 64029 TCTCCAAGGATCTCCACG----ACTGGGACAACAAGCTCAACGACAACGAGCGTCACTTC 64084 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| |||||||||||||| || ||||||| ||| || ||||| ||||||||| | Sbjct 64085 ATCTCCCACGTCCTCGCCTTCTT-CGCCGCCTCCGACGGTATCGTCAACGAGAACCTTGT 64143 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || || || | || || || | ||||| |||| || ||||| |||||||| Sbjct 64144 CGAGCGTTTCAGCTCTGAAGTTCAGGCCGCCGAGGCCCGTTGCTTCTACGGTTTCCAGAT 64203 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || || ||||||||||| || |||||||||||||| |||||||||||| || || Sbjct 64204 CATGATGGAGAACATCCACTCGGAGACCTACTCGCTCCTCATCGACACCTACATCCGTGA 64263 Query 1456068 CCCGGTCGAGAAG---GACCACCTCTTTCGCGCCATCGACACGGT-GCCGTCGGTGAGGA 1456123 || |||| || || ||||||| |||| |||| || | ||||| || | | Sbjct 64264 GCC---CGAGCAGCGCGAGTTCCTCTTTGACGCCGTCGAGACCATCCCCGTC-GTCAAGC 64319 Query 1456124 AAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGC 1456182 | ||||| |||||||| | ||||||| | | || | || | |||| ||||||| Sbjct 64320 AGAAGGCTGACTGGGCTCTCCGATGGATCAGCGACAAG---CGCGCCTCTTTCGCCGAGC 64376 Query 1456183 GGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCT 1456241 | ||||| | ||| ||||| |||||||| ||||| ||||| || ||| | |||||| Sbjct 64377 GTCTCGTTGCCTTCGCCGCTGTCGAGGGTATCTTCTTCTCCGGTTCCTTCGCCTCCATCT 64436 Query 1456242 TTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 | |||||||||||||| || |||||||||||||| Sbjct 64437 TCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCT 64470 >seq141 Length=34748 Score = 181 bits (200), Expect = 2e-39 Identities = 278/393 (71%), Gaps = 15/393 (4%) Strand=Plus/Plus Query 259790 GTCGTCGAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCC 259849 |||| ||||| |||||| | |||||||||||||||||| | || || ||| | Sbjct 29670 GTCGCAGAGCGTCCCCAGCACATGCTCATGCGTGTCGCCGTCGGT-ATCCACGGTCAG-- 29726 Query 259850 GACGTCGACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTG 259909 ||| ||| || |||| || ||| |||||| | ||||||||| ||| Sbjct 29727 GACATCGCCA--GCGC-----CA-----TCGAGACCTACAACCTCATGTCGCAAAAGTAC 29774 Query 259910 TTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCG 259969 || ||| || ||||||| ||||| || ||||| || || | ||||||| |||||| Sbjct 29775 TTTACCCACGCCTCGCCCACCCTCTTCAACGCCGGTACCCCTCACCCGCAGCTCTCGTCG 29834 Query 259970 TGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAG 260029 || || || | |||||||| ||| || ||||| |||||||| |||||||||||| Sbjct 29835 TGTTTCCTCGTCACCATGAAGGACGACTCCATCGACGGCATCTACGACACGCTCAAGACC 29894 Query 260030 TGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCC 260089 ||||| | ||||||||| | ||||| || |||||| | | ||| | || | | Sbjct 29895 TGCGCCATGATCTCCAAGACCGCCGGTGGTATCGGTCTCAACATCCACTGCATCCGTGGC 29954 Query 260090 GCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGC 260149 | ||| ||||| | || ||||||||||| |||||| | || |||||||| ||| Sbjct 29955 ACTGGCTCCTACATTGCCGGCACCAACGGTGTTAGCAACGGTATCGTTCCCATGCTCCGC 30014 Query 260150 GTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 || || ||| |||| || ||||||||||||||| Sbjct 30015 GTCTTCAACAACACCGCCCGCTACGTCGACCAG 30047 Score = 100 bits (110), Expect = 4e-15 Identities = 109/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 262092 AGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACA 262151 || |||||| ||||| ||| | |||| | |||||| || | |||| ||| |||||| Sbjct 30346 AGCTCTGGTACGCCATCCTCGAGTCCCAGACCGAGACTGGTAACCCCTTCATCCTCTACA 30405 Query 262152 AGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAAC 262210 ||||||| | ||||| | ||||||||| ||||||| ||||||| | || | ||||| Sbjct 30406 AGGACGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGGCACCATCA-AGTGCTCCAAC 30464 Query 262211 CTGTGCACCGAGATCGTCCAGT 262232 |||||||||||||| || ||| Sbjct 30465 TTGTGCACCGAGATCATCGAGT 30486 >seq13 Length=272317 Score = 118 bits (130), Expect = 2e-20 Identities = 178/248 (72%), Gaps = 14/248 (6%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||| ||| |||||| || ||||||||||| || |||||| | ||| || | Sbjct 82285 TACTCGACCTACATCTACCGTGTCCTCAAGCAGGTCCA-CCCCGA--CACTGG--TAT-C 82338 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 || |||||| ||||| | ||| | |||||||| ||| | ||||| |||| ||||||| | Sbjct 82339 TCGAACAAGGCCATGGCTATCCTCAACTCGTTCGTCCAGGACATCTTCGAGCGCATCGCC 82398 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGC----TCCAACAAGCGCAACACGATCGGCACGCGCGA 725074 |||||||| || || ||| | ||||||| || ||| |||| || Sbjct 82399 ACCGAGGC----TTCCAAGCTCGCTTCGTACAACAAGAAGTCGACCATCTCGTCGCGAGA 82454 Query 725075 GATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGA 725134 ||||||||||||||| ||||| ||| | | ||| || || ||| ||||||| |||| || Sbjct 82455 GATCCAGACCGCCGTCCGCCTCATCCTCCCCGGTGAGCTTTCCAAGCACGCCATCTCGGA 82514 Query 725135 GGGCACCA 725142 || |||| Sbjct 82515 AGGTACCA 82522 >seq6 Length=350643 Score = 91.5 bits (100), Expect = 2e-12 Identities = 207/308 (67%), Gaps = 5/308 (2%) Strand=Plus/Minus Query 1817472 ACCGACGAGGGCGTCCATGACCAGGCCGATGATGGGCTTGTTGGCCTGCGGCGACACGGT 1817531 |||| ||| | |||| ||| | || |||| ||||||||||||||| ||||| || | Sbjct 330543 ACCGCAGAGCGTGTCCTGGACGATACCCATGACGGGCTTGTTGGCCTGAGGCGAGACAAT 330484 Query 1817532 CTTGAGGGCCACGTTCATGG--TGTGCGTCACCTCGGCGCGCGCGTCTCAGA-CTGGGGC 1817588 || | | ||| |||| | |||| | |||||| || | ||| | ||| ||| Sbjct 330483 CTGACGAGGCACC--CATGCGATCTGCGAGAGCTCGGCACGGGTCTCTTCGCTCTGAGGC 330426 Query 1817589 ACATGGAGGTTCATCTCGTCGCCGTCAAAGTCGGCATTGTAGGTGCCCGTGACGGCCAGG 1817648 || || | |||||||||||| || || || ||||| ||||||| | ||||||| ||| Sbjct 330425 ACGTGCAAGTTCATCTCGTCACCATCGAAATCGGCGTTGTAGGGGGGCGTGACGCTGAGG 330366 Query 1817649 TTGAACCGCATGGTACGGCCGGGCATGGGCACCACCTTGTGCATGAGCATGGAGCCCATG 1817708 |||| || | ||| | | |||| || | | ||||| | ||| || | || Sbjct 330365 TTGAGACGGAAGGTGGAGTAGTCCATGAGCTTGATCCTGTGCGACATCATCGACATCTTG 330306 Query 1817709 TGGAGTGAGGGCTGCCGGTTCATCACCACGGCGTCGCCGGCGCGCAGGTGACGCTCGACT 1817768 || | |||||||| ||||| | | ||| ||| || | ||||| |||||||| Sbjct 330305 TGCAACGAGGGCTGACGGTTGAAGAGAACGTAGTCACCATCCTTGAGGTGGCGCTCGACG 330246 Query 1817769 GTCCACCC 1817776 |||| || Sbjct 330245 ATCCAGCC 330238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176324684272744