Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq27 123 2e-23 seq18 107 2e-18 seq3372 98.7 9e-16 seq25 96.9 3e-15 >seq27 Length=198227 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 35534 TGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGC 35593 || || || |||||||| ||||||||||| || | || ||| || |||| |||| |||| Sbjct 160835 TGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCCGACAGGGTACGACCGTCCTCCAACTGC 160776 Query 35594 TTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTT 35653 ||||| ||||| ||||| ||||||||||| | || | | |||||||||| |||||| Sbjct 160775 TTACCAGCAAAGATCAAACGCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGGATCTTG 160716 Query 35654 TGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTC 35713 ||| | | | | | || || ||| || ||||||| ||||| || || ||||| Sbjct 160715 GCCTTGACATTGTCAATGGTATCCGACGACTCGACCTCCAAAGTGATGGTCTTTCCCGTG 160656 Query 35714 AAAGTTTTCACAAATATCTGCAT 35736 | || || ||||| || ||||| Sbjct 160655 AGCGTCTTGACAAAGATTTGCAT 160633 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | |||||| | || || || |||||||| ||||||||||| |||| Sbjct 160631 CCACCGCGGAGTCGCAACACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAA 160572 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || ||||||||||| ||||| || | ||||||||||| | || Sbjct 160571 AGAGTACGGCCATCCTCGAGCTGCTTACCGGCAAAGATGAGTCGCTGCTGGTCAGGTGGG 160512 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | ||||||||| ||| ||| || | |||| | | |||||| || || || Sbjct 160511 ATACCTTCCTTGTCCTGGAT-TTTCGCCTTTACGTTGTCGATCGTGTCCGAGGACTCAAC 160453 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | |||||||| || || |||| ||| || ||||| |||||||| Sbjct 160452 CTCGAGAGTGATCGTCTTTCCGGTCAGAGTCTTGACAAAGATCTGCAT 160405 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| ||||||||||| |||| | ||| || | || || || ||||| || || || Sbjct 160367 TCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGTTGCTTTCCTGCGAAA 160308 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | || |||||||| | |||| || |||||||||| |||||| ||| | ||| Sbjct 160307 ATGAGACGTTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGA-CGTT 160249 Query 35666 G-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| ||||| || || | ||||| || || || ||||| || || || Sbjct 160248 GTCGATGGTGTCCGAGGATTCAACTTCGAGAGTGATGGTCTTGCCGGTCAAGGTCTTGAC 160189 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 160188 AAAGATCTGCAT 160177 Score = 89.7 bits (98), Expect = 5e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | |||||| | || |||| ||| ||||| ||||| Sbjct 160140 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTTCGTCCATCTTCCAACTGTTTACCGGCAAA 160081 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | || |||||||||| ||||| ||| | || Sbjct 160080 GATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGT 160022 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | |||||| || || ||||| | ||||| || || || || | || || | Sbjct 160021 TGTCAATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGA 159962 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 159961 CGAAGATCTGCAT 159949 >seq18 Length=238221 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| || |||| || ||||||||||| || || Sbjct 226406 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTACCGGCGAA 226465 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | |||| | |||||||||| |||||| ||| | || Sbjct 226466 GATAAGTCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 226524 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| || |||||||| | ||||| || |||||||| | || || | Sbjct 226525 TGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTAA 226584 Query 35724 CAAATATCTGCAT 35736 |||| |||||||| Sbjct 226585 CAAAGATCTGCAT 226597 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/201 (70%), Gaps = 3/201 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| || |||| || |||||||| || ||||| Sbjct 147256 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAA 147197 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | || |||||| || ||||| ||| | || Sbjct 147196 GATAAGTCGCTGCTGGTCAGGTGGGATGCCCTCCTTATCTTGAATCTTGGCCTTGA-CGT 147138 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| || |||||||| | ||||| || || || || | || || | Sbjct 147137 TGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGA 147078 Query 35724 CAAATATCTGCATTCTGTGCG 35744 | || ||||||| ||||| || Sbjct 147077 CGAAGATCTGCA-TCTGTTCG 147058 >seq3372 Length=309 Score = 98.7 bits (108), Expect = 9e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 35580 CGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCT 35639 |||| || ||||||||||| ||||| || | ||||||||||| | || | | ||||| Sbjct 14 CGTCTTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGGGGGATACCCTCCT 73 Query 35640 TGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGA 35699 ||||| |||||| ||| | | | | | |||||| || |||||||| | |||| Sbjct 74 TGTCCTGGATCTTGGCCTTGACATTGTCGATTGTGTCGGAAGACTCCACCTCAAGGGTGA 133 Query 35700 TCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || || |||| ||| || ||||| |||||||| Sbjct 134 TCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 170 >seq25 Length=198755 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||| || || || |||||| || |||||||| |||| Sbjct 152319 CCACCACGAAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAA 152260 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| || ||||||||||| || || |||| ||||||||||| | || Sbjct 152259 AGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 152200 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||| | | | | | ||||| || || ||| Sbjct 152199 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCCGAAGACTCGACC 152140 Query 35690 TCCACCGTGATCGTTTTACCCGT 35712 || | ||||| || ||||| || Sbjct 152139 TCGAGGGTGATGGTCTTACCTGT 152117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450706754612960