Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq27 145 8e-30 seq18 134 1e-26 seq141 118 1e-21 seq25 102 8e-17 seq75 84.2 2e-11 >seq27 Length=198227 Score = 145 bits (160), Expect = 8e-30 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 |||||||| || ||||| || ||||||||||| ||||||||||||||| || |||| | Sbjct 160394 AGTCGCAAGACAAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGG 160335 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || ||||| || || ||||| ||||| | ||| ||||| || || || ||||| || Sbjct 160334 CCATCCTCGAGTTGCTTTCCTGCGAAAATGAGACGTTGCTGGTCAGGGGGAATGCCCTCC 160275 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | ||||| || ||||| || |||||||| Sbjct 160274 TTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCCGAGGATTCAACTTCGAGAGTG 160215 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || || || || || || ||||| Sbjct 160214 ATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 160177 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || | ||| || ||||| ||||| || ||||||||||| | Sbjct 160175 CCACCACGGAGACGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 160116 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || | |||||| || ||||| || | ||||||||| |||||||| Sbjct 160115 AGGGTTCGTCCATCTTCCAACTGTTTACCGGCAAAGATGAGACGCTGCTGGTCGGGCGGG 160056 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || ||||| || ||||| ||| | |||||||| || || || Sbjct 160055 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACC 159996 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || ||||| | || || ||||| || ||||| Sbjct 159995 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 159949 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | |||||||||||||||||| | ||| ||||| ||||||||||||||| | Sbjct 160631 CCACCGCGGAGTCGCAACACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAA 160572 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || |||||||| || || ||||| || | |||||||| || || || Sbjct 160571 AGAGTACGGCCATCCTCGAGCTGCTTACCGGCAAAGATGAGTCGCTGCTGGTCAGGTGGG 160512 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || ||||| || || ||| | ||||| || || || || Sbjct 160511 ATACCTTCCTTGTCCTGGATTTTCGCCTTTACGTTGTCGATCGTGTCCGAGGACTCAACC 160452 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| || || || ||||| | ||| || || || || ||||| Sbjct 160451 TCGAGAGTGATCGTCTTTCCGGTCAGAGTCTTGACAAAGATCTGCAT 160405 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| | ||| ||||| |||||||||||||| | ||| || ||| || Sbjct 160841 ACAAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCCGACAGGGTACGACCGTCCTCC 160782 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 | ||| || || ||||| |||||||||||||| ||||| || || || || || || || Sbjct 160781 AACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGG 160722 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | || || ||||| || || || | ||| ||||| || Sbjct 160721 ATCTTGGCCTTGACATTGTCAATGGTATCCGACGACTCGACCTCCAAAGTGATGGTCTTT 160662 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || || || || |||||||| Sbjct 160661 CCCGTGAGCGTCTTGACAAAGATTTGCAT 160633 >seq18 Length=238221 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 ||||| || ||||| |||||||| || ||||||||||| | || | ||| ||| Sbjct 147501 ACGAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCAGAGAGTGTACGGCCGTCCTCG 147442 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| ||||| || | ||||||||||||||| || |||||||| || || || Sbjct 147441 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCGGGTGGGATGCCTTCCTTGTCCTGG 147382 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | ||||| || || || || ||||| || || || || Sbjct 147381 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATCGTCTTG 147322 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| ||||| || ||||| || ||||| Sbjct 147321 CCGGTCAAAGTCTTGACGAAGATCTGCAT 147293 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||||||||| || || || ||||| || ||||||||||| || ||| | Sbjct 147282 AGGCGGAGCACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGG 147223 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| ||||| ||||| || | |||||||| || || || ||||| || Sbjct 147222 CCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCAGGTGGGATGCCCTCC 147163 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || |||||||| || ||||| ||| | ||||| || || ||||| || || || Sbjct 147162 TTATCTTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTG 147103 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| | || || ||||| || ||||| Sbjct 147102 ATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 147065 Score = 113 bits (124), Expect = 5e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||||||||| || || || ||||| || ||||||||||| || ||| | Sbjct 226380 AGGCGGAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGG 226439 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| || || || || || | |||||||| || || || || || || Sbjct 226440 CCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCAGGGGGAATTCCCTCC 226499 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | ||||| || || ||||| ||||| || Sbjct 226500 TTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTG 226559 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| ||||| || | || ||||| || || ||||| ||| Sbjct 226560 ATGGTCTTACCCGTGAGGGTCTTAACAAAGATCTGCATCTTG 226601 >seq141 Length=34748 Score = 118 bits (130), Expect = 1e-21 Identities = 547/862 (63%), Gaps = 7/862 (1%) Strand=Plus/Plus Query 7537 ATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGGGCATT 7596 ||||||||| | ||| || || || |||||||| |||| || || || || || Sbjct 29658 ATCAACGGCAAGGTCGCAGAGCGTCCCCAGCACATGCTCATGCGTGTCGCCGTCGGTATC 29717 Query 7597 CACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAAACAGTTT 7656 ||||| | ||||| | | |||| | || || ||| | | ||||| || | ||| Sbjct 29718 CACGGTCAGGACATCGCCAGCGCCATCGAGACCTACAACCTCATGTCGCAAAAGTACTTT 29777 Query 7657 ACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCAATTGTCCTCGTGT 7716 || ||||| ||||||||| | || ||| || || || || | || |||||| Sbjct 29778 ACCCACGCCTCGCCCACCCTCTTCAACGCCGGTACCCCTCACCCGCAGCTCTCGTCGTGT 29837 Query 7717 TTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTGCGCGA-TTG 7775 || | | |||||| || ||| |||||||||||| ||| ||||||| | || || Sbjct 29838 TTCCTCGTCACCATGAAGGACGACTCCATCGACGGCATCTACGACACGCT-CAAGACCTG 29896 Query 7776 CGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAA 7835 ||||| || ||||| || ||| || || ||||| ||| | || | | || | || Sbjct 29897 CGCCATGATCTCCAAGACCGCCGGTGGTATCGGTCTCAACATCCACTGCATCCGTGGCAC 29956 Query 7836 CGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGT 7895 || | ||| | ||||||||| || |||| | | |||||| | ||||| Sbjct 29957 TGGCTCCTACATTGCCGGCACCAACGGTGTTAGCAACGGTATCGTTCCCATGCTCCGCGT 30016 Query 7896 GTTCAATAACGCGGTGCGACATGTAGACCAGGGGGG---AAAGCGCAAAGGCGCCGCTGC 7952 ||||| ||| | | || | || |||||||| || ||||| || ||| ||| Sbjct 30017 CTTCAACAACACCGCCCGCTACGTCGACCAGGGTGGCAACAAGCGTCCCGGTGCCTTTGC 30076 Query 7953 CATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATCTGCGTCGCAACAT 8012 |||||| | ||||| |||||| ||||| | | | | || | || || ||| Sbjct 30077 CATCTACATTGAGCCATGGCACTCGGACGTCTTTGAGTTCCTCGACCTCCGCAAGAACCA 30136 Query 8013 GGGTTGCGAAGACAGCAAAGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTT 8072 ||| || || || || || || |||| || | ||||| |||||||| || Sbjct 30137 CGGTAAGGAGGAGGTTCGTGCTCGTGAGCTCTTCTACGCCCTCTGGGTTCCCGATCTCTT 30196 Query 8073 TATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCCGATCGTTGCCCTTT 8132 |||| ||| || | ||| | ||||| |||||||||||| | ||||| Sbjct 30197 CATGAAGCGTGTCGAGCAGAACGGTGACTGGTCCCTCATGTGCCCCAACGAGTGCCCCGG 30256 Query 8133 ATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAACAATACGAACACGACGG 8192 | || ||||| | || || | | ||| | | ||||| ||| || Sbjct 30257 TCTCGCCGACTGCTACGGCGACGAGTTCGAGCGTCTCTACGAGCGCTACGAGGCCGAGGG 30316 Query 8193 CGCGT-ACGTGCGGCAAGTGAAAGCGCGCGACCTGCACCGCGCCATTATCGAATGTCAAA 8251 | ||| | ||| || || || | | || |||||| |||| | || | Sbjct 30317 C-CGTGCCAAGCGCACTGTCAAGGCTCAGAAGCTCTGGTACGCCATCCTCGAGTCCCAGA 30375 Query 8252 ACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAA 8311 ||| || |||| || | ||| || ||||| |||||| |||| ||| ||||| || | Sbjct 30376 CCGAGACTGGTAACCCCTTCATCCTCTACAAGGACGCTGCCAACCGCAAGAGCAACCAGA 30435 Query 8312 GCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGC 8371 ||| | |||||||| ||| ||| ||||| | || || | ||||||| || | Sbjct 30436 AGAACCTCGGCACCATCAAGTGCTCCAACTTGTGCACCGAGATCATCGAGTACAGTGCCC 30495 Query 8372 CCGACGAAGTGGCCGTTTGCAA 8393 ||||||| || ||||| ||||| Sbjct 30496 CCGACGAGGTCGCCGTCTGCAA 30517 >seq25 Length=198755 Score = 102 bits (112), Expect = 8e-17 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 || || ||||| || |||||||||||| || |||| | ||| |||||||| || || Sbjct 152289 GTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTACCG 152230 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 || || |||| |||||||| ||||| || ||||| || || || || || || ||| Sbjct 152229 GCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTG 152170 Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || ||| | ||||| || || || || ||||| || ||||| ||||| ||| Sbjct 152169 ACATTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTACCTGTT 152116 >seq75 Length=98333 Score = 84.2 bits (92), Expect = 2e-11 Identities = 293/449 (65%), Gaps = 25/449 (6%) Strand=Plus/Minus Query 21426 GTATTCGCCGACCCGTCTTTCAAAGAAATTTGTTTTTCCTTCTAGTGCAATGTTTTTCAT 21485 |||||| | ||| | | || ||||| || || ||||||| || ||||||| ||| Sbjct 64813 GTATTCTGCAACCTTTTTCTCGAAGAAGTTGGTCTTTCCTTGAAGACTTATGTTTTCCAT 64754 Query 21486 AAAATTAAAAGGATTGCTGGCGTAAAAAC--ACCTTTCTTCGTTCAATTCCACGCA--CA 21541 || | ||| || ||||||||| || ||| ||| ||| | | || || Sbjct 64753 GAAGTCAAAGGGGTTGCTGGCGCCGTAATGGACCGGGTTTC---CAAG-CGAAACAAGCA 64698 Query 21542 AACGATCCGCCACGAATTCAATGTATTGACACATGC-TGTCGCAATTCATGCCCAACAGA 21600 ||| || |||||| | || ||||| || ||||| | ||| | |||||||| | || | Sbjct 64697 GACGGTCAGCCACGTACTCTATGTACTGGCACATCAATTTCG-AGTTCATGCCAATCAAA 64639 Query 21601 TCGACCGGTAGCGCTTCGGTGAAAAACTCCTTCTCGATAGCCACCGCTTCCTTGATCATG 21660 || || || || ||||||| || | |||||||| |||| || || |||| || Sbjct 64638 GATACGGGGAGAGCGTCGGTGAGGAAAGCTTTCTCGATTTCCACGGCCTCGGTGATGATT 64579 Query 21661 GCGTGTA---TTTCACCGGCGGACAATTTGTCTTGAGGCTCGATGTATTTGTTGTAGTAG 21717 | | | | || | || | | | |||||||| | | || || | Sbjct 64578 TTGAGCACGGTGTC-CGGGTGCGCTCGCT-TCTTGAGG----------TGGCTGAAGAGG 64531 Query 21718 AGACAAGCAAAATTGGTGTGCAATCCCTCGTCGCGCGAAATCAATTCGTTGCTGAACGTG 21777 || || ||||| | |||||||| || ||||| ||||| || | |||||| ||| ||| Sbjct 64530 AGGCAGGCAAAGTCGGTGTGCAGACCTTCGTCACGCGAGATGAGCTCGTTGGAGAAAGTG 64471 Query 21778 AGACCGGGCATTAAACCTCGATTTTTAATGTAAAAAATTGCCGCAAAGCTACCGGaaaaa 21837 ||||||||||| | ||| || || || | | || || | || ||| |||||| || Sbjct 64470 AGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAACCGGAGAAG 64411 Query 21838 aaCACGCCCTCCACAATGGCGAACGCCAC 21866 || | ||||| ||| |||||| || || Sbjct 64410 AAGATACCCTCGACAGCGGCGAAGGCAAC 64382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505301034998240