Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq141 233 2e-56 seq75 141 1e-28 >seq141 Length=34748 Score = 233 bits (258), Expect = 2e-56 Identities = 911/1417 (64%), Gaps = 25/1417 (2%) Strand=Plus/Minus Query 110681 AACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCA 110740 |||||||| ||||| | | | |||||| || | ||||| || || ||||| || Sbjct 31087 AACTCACCGGCGAGCACACGACGCGAGTAGATATTGGAGGTGTAAGGCTCGAAGCACTCG 31028 Query 110741 TTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTA 110800 || |||| ||| || ||||||||| || ||||| || || | | || ||| Sbjct 31027 TTGAAGCCCAGGATCTGACTGGTGGAGGCAGTAGGCATGGGAGCGAGGAGGAGCGAGTTG 30968 Query 110801 CGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTA---GTT-GAGCTT 110856 |||||||| | || ||| ||||||| | ||||||| | ||| ||| Sbjct 30967 CGAAGACCGTGCTTGGCGATCTTGGCCTTGAGCTCGGCCCAGTCCCAAAGGTTCGAGGG- 30909 Query 110857 GGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAA 110916 ||| |||| ||||||||| |||| ||| | || ||||| ||||| || || | | Sbjct 30908 GGTGACACC---CCACATGTCGTACTGGAGCTCACCCTGGGAAGCGGGCGAGCCGGCGTA 30852 Query 110917 GGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACA-GCTCGCCTCCAGGGATGCGTGAT 110975 ||| || |||| || || | | ||||| || || | |||| || |||| ||||| | Sbjct 30851 GGTCTCGTAGGTGCCGTGCTCCTGAGCCAGCTCGCACGATCGC-TCGAGGGCGGCGTGGT 30793 Query 110976 ACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGC 111035 | ||||| || ||||| | | || | || || || || || ||||||| Sbjct 30792 AGATGGTCTCGAAGATCTGGACGTTGAGACGACGAGCCTCGGGCGACTCGAAAGCGTAGC 30733 Query 111036 GGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCA 111095 | || || | || |||||||| || ||||| | ||| || || | || |||| Sbjct 30732 CCATGATCATGAAGGCGTCGGCGAGACCCTGGACACCGATACCGATGGGACGATGGCGCA 30673 Query 111096 TATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGAT 111155 | || ||| | || || ||| ||||| || | || |||| |||| ||| || | Sbjct 30672 TGTTGGACCTGCGAGCCTCCTCGACGGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGT 30613 Query 111156 TTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTT 111215 | ||| | ||| | || || || || | | || | || || | Sbjct 30612 TCTTGCAGATGGCCTTGGCGACCTCGTGGAGACGCTTGAAGTCGTAGGTCTTGGTGACGG 30553 Query 111216 CATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTAT 111275 | || | | || |||||||| || ||||| ||||| || || ||| || Sbjct 30552 GGTCGATGAAGGTGGGGAGGGCGATGGAAGCCAAGTTGCAGACGGCGACCTCGTCGGGGG 30493 Query 111276 CTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTT 111335 | ||||||| | || || || || |||||||| | ||| || || || | ||||| | Sbjct 30492 CACTGTACTCGATGATCTCGGTGCACAAGTTGGAGCACTTGATGGTGCCGAGGTTCTTCT 30433 Query 111336 GGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCT 111395 |||| ||||| |||| || ||||||||||| ||| |||| | || ||||| |||| Sbjct 30432 GGTTGCTCTTGCGGTTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTACCAGTCTCGGTCT 30373 Query 111396 GTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCC 111454 | || | ||| || || | ||| | | || | | || | ||| || ||||| || ||| Sbjct 30372 GGGACTCGAGGATGGCGTACCAGAGCTTCTGAGCCTTG-ACAGTGCGCTTGGCACGGCCC 30314 Query 111455 TCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCT 111514 || |||||||| |||||| || ||||| || || ||||| |||||| Sbjct 30313 TCGGCCTCGTAGCGCTCGTAGAGACGCTCGAACTCGTCGCCGTAGCAGTCGGCGAGACCG 30254 Query 111515 GGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAA 111574 || || || || || | || ||||| | ||| | ||| || ||||||||||| Sbjct 30253 GGGCACTCGTTGGGGCACATGAGGGACCAGTCACCGTTCTGCTCGACACGCTTCATGAAG 30194 Query 111575 AGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGG 111634 || || |||| ||| |||| | ||||| || | | ||| |||| || | ||| ||| Sbjct 30193 AGATCGGGAACCCAGAGGGCGTAGAAGAGCTCACGAGCACGAACCTCCTCCTTACCGTGG 30134 Query 111635 TTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCG 111694 || || | || |||||||| | || |||| |||||||||||||| |||| || Sbjct 30133 TTCTTGCGGAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGCTCAATGTAGATGGCA 30074 Query 111695 ATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAAT 111748 | | || ||||| ||| | || | || ||||| || ||| ||| || Sbjct 30073 AAGGCACC---GGGACGCTTGTTGCCACCCTGGTCGACGTAGCGGGCGGTGTTGTTGAAG 30017 Query 111749 ACGCGAAGCATTGGAATAATACCATCTGAT-TGACCATTTGTCCCCCGAATACGAGATTT 111807 ||||| ||||| |||| ||||| | || | ||| || || || ||| || Sbjct 30016 ACGCGGAGCATGGGAACGATACCGT-TGCTAACACCGTTGGTGCCGGCAATGTAGGAGCC 29958 Query 111808 ATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGC 111867 | || | | | ||||||| | || ||||| || || ||| ||||| || Sbjct 29957 AGTGCCACGGATGCAGTGGATGTTGAGACCGATACCACCGGCGGTCTTGGAGATCATGGC 29898 Query 111868 ACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAA 111927 || | | || || | ||||| |||| ||| ||||| ||||| ||| || ||||| Sbjct 29897 GCAGGTCTTGAGCGTGTCGTAGATGCCGTCGATGGAGTCGTCCTTCATGGTGACGAGGAA 29838 Query 111928 GCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAAT 111987 || || | |||||| || ||||| || ||||||||||| || | ||||| | Sbjct 29837 ACACGACGAGAGCTGCGGGTGAGGGGTACCGGCGTTGAAGAGGGTGGGCGAGGCGTGGGT 29778 Query 111988 GAACATAC-CTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGT 112046 || ||| ||| ||||| || ||| ||||| | | | | ||||| | |||| Sbjct 29777 -AAAGTACTTTTGCGACATGAGGTTGTAGGTCTCGATGGCGCTGGCGATGTCCTGACCGT 29719 Query 112047 GGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 |||| |||| ||||| ||||||| ||||| ||| || Sbjct 29718 GGATACCGACGGCGACACGCATGAGCATGTGCTGGGG 29682 >seq75 Length=98333 Score = 141 bits (156), Expect = 1e-28 Identities = 301/439 (69%), Gaps = 8/439 (2%) Strand=Plus/Minus Query 122386 TTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAATGGATTC 122445 ||||| |||||||||||||| || | ||| || ||||||||||| |||||||| || || Sbjct 64797 TTCTCGAAGAAGTTGGTCTTTCCTTGAAGACTTATGTTTTCCATGAAGTCAAAGGGGTTG 64738 Query 122446 TTCGCGTTCCAAATGGGT-GGCACCCCAACTTGTTTGAGGAGACGATCCGACACATACTC 122504 | ||| | ||||| || |||| || ||||| || | ||| ||||| Sbjct 64737 CTGGCGC-CGTAATGGACCGGGTTTCCAAGCGAAACAAGCAGACGGTCAGCCACGTACTC 64679 Query 122505 AATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAG-GTTACATGGGAGTGCGTCCA 122563 ||||||| | ||||| | |||||||| || || | | ||| ||||| ||||| Sbjct 64678 TATGTACTGGCACATCAATTTCGAGTTCATGCCAATCAAAGATACG-GGGAGAGCGTCGG 64620 Query 122564 AGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATAGTTTCGGTAG 122623 || ||| ||||||| || || || ||||| | | ||| | | | || || | | Sbjct 64619 TGAGGAAAGCTTTCTCGATTTCCACGGCCTCGGTGATGATTTTGAGCACGGTGTCCGG-G 64561 Query 122624 TGGG-TCTATTACGCAAAGTCT-TGAAGAGCTCCACGGCAAACTCCTGGTGGAGACCCTC 122681 || | || || | | || ||||||| |||||| || ||| ||||| || Sbjct 64560 TGCGCTCGCTT-CTTGAGGTGGCTGAAGAGGAGGCAGGCAAAGTCGGTGTGCAGACCTTC 64502 Query 122682 ATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCTTCAA 122741 || || || || || || || ||||| ||||| ||||||||||| |||||||| | Sbjct 64501 GTCACGCGAGATGAGCTCGTTGGAGAAAGTGAGACCGGGCATGAGACCACGCTTCTTGAG 64442 Query 122742 CCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACGCAAA 122801 ||| | || | | ||| || |||||||||||||||||||| ||| || || |||| Sbjct 64441 CCAGAAGATGGAGGCGAAGGAACCGGAGAAGAAGATACCCTCGACAGCGGCGAAGGCAAC 64382 Query 122802 AAGGCGTTCGGCGAAGGAG 122820 || || |||||||| ||| Sbjct 64381 GAGACGCTCGGCGAAAGAG 64363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627911009635200