Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq141 253 3e-62 seq75 143 3e-29 seq2 125 9e-24 seq78 84.2 3e-11 >seq141 Length=34748 Score = 253 bits (280), Expect = 3e-62 Identities = 920/1420 (65%), Gaps = 31/1420 (2%) Strand=Plus/Minus Query 118155 AACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCA 118214 |||||||| ||||| || | | |||||||||| ||||| ||||| |||||||| Sbjct 31087 AACTCACCGGCGAGCACACGACGCGAGTAGATATTGGAGGTGTAAGGCTCGAAGCACTCG 31028 Query 118215 TTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTA 118274 ||| |||| ||| || |||||||| || |||||||| || | ||| || ||| Sbjct 31027 TTGAAGCCCAGGATCTGACTGGTGGAGGCAGTAGGCATGGGAGCGAGGAGGAGCGAGTTG 30968 Query 118275 CGGAGACC---CTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTA---GTT-GAG 118327 || ||||| ||| | | || ||||||| || ||||||| | ||| ||| Sbjct 30967 CGAAGACCGTGCTTGGCGATCTTGG---CCTTGAGCTCGGCCCAGTCCCAAAGGTTCGAG 30911 Query 118328 CTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTC 118387 || | ||| ||||| || ||||||| ||| ||||| || ||||| || | Sbjct 30910 GGG-GTGACACCC---CACATGTCGTACTGGAGCTCACCCTGGGAAGCGGGCGAGCCGGC 30855 Query 118388 AAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGA-GCTCGCCTCGAGGGCTGCGT 118446 | ||||| || | ||| | ||| |||| ||| | | |||| |||||||| |||| Sbjct 30854 GTAGGTCTCGTAGGTGCCGTGCTCCTGAGCCAGCTCGCACGATCGC-TCGAGGGCGGCGT 30796 Query 118447 GATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCG- 118505 | || || || || || || | | || | |||||| || || || ||| Sbjct 30795 GGTAGATGGTCTCGAAGATCTGGACGTTGAGACGACGAGCCTCGGGCGACTCGAAAGCGT 30736 Query 118506 AGTCGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATG 118564 || | || | || || | || |||||||| |||||||||| || || || ||||| Sbjct 30735 AGCC--CATGATCATGAAGGCGTCGGCGAGACCCTGGACACCGATACCGATGGGACGATG 30678 Query 118565 TCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATT 118624 | ||| || ||| | ||||| ||| ||||| || | || | ||||| | | | || Sbjct 30677 GCGCATGTTGGACCTGCGAGCCTCCTCGACGGGGTAGTAGTTGATGTCGATGATCTTGTT 30618 Query 118625 TAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGT 118684 || || ||| || |||| | || || || || | | | || | | || Sbjct 30617 GAGGTTCTTGCAGATGGCCTTGGCGACCTCGTGGAGACGCTTGAAGTCGTAGGTCTTGGT 30558 Query 118685 CTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATC 118744 | | || | | || |||||||| || |||| || || || | | ||| || Sbjct 30557 GACGGGGTCGATGAAGGTGGGGAGGGCGATGGAAGCCAAGTTGCAGACGGCGACCTCGTC 30498 Query 118745 CTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTT 118804 || ||||||| || || || ||||||||||| || | ||| |||||||| | ||| Sbjct 30497 GGGGGCACTGTACTCGATGATCTCGGTGCACAAGTTGGAGCACTTGATGGTGCCGAGGTT 30438 Query 118805 CTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTC 118864 ||| || || ||| ||| || |||||||| || ||| | || | || ||||| Sbjct 30437 CTTCTGGTTGCTCTTGCGGTTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTACCAGTCTC 30378 Query 118865 CGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTC 118923 || ||||||| ||| || || | ||||| | || | ||| |||||| ||||| | Sbjct 30377 GGTCTGGGACTCGAGGATGGCGTACCAGAGCTTCTG-AGCCTTGACAGTGCGCTTGGCAC 30319 Query 118924 GCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGA 118983 | ||||| ||||||| |||||| || ||||| || || | || | || Sbjct 30318 GGCCCTCGGCCTCGTAGCGCTCGTAGAGACGCTCGAACTCGTCGCCGTAGCAGTCGGCGA 30259 Query 118984 GCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCA 119043 | || || || | ||||| | ||| ||||| | ||| || ||| || ||||||| Sbjct 30258 GACCGGGGCACTCGTTGGGGCACATGAGGGACCAGTCACCGTTCTGCTCGACACGCTTCA 30199 Query 119044 TGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCC 119103 ||||||| || || | |||||| || ||||||| || ||| ||| | || || | | Sbjct 30198 TGAAGAGATCGGGAACCCAGAGGGCGTAGAAGAGCTCACGAGCACGAACCTCCTCCTTAC 30139 Query 119104 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 119163 | || || || | || | || || | || |||| |||||| || || | ||| | Sbjct 30138 CGTGGTTCTTGCGGAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGCTCAATGTAGA 30079 Query 119164 CCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAA 119220 || | | || ||| ||| |||||| || || | || ||| ||| | Sbjct 30078 TGGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGGGCGGTGTTGTTGA 30019 Query 119221 ATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAA--TACGAGA 119278 | || || ||||| |||| |||||| | | || || || || || || ||| Sbjct 30018 AGACGCGGAGCATGGGAACGATACCGTTGCTAACACCGTTGGTGCCGGCAATGTAGGAGC 29959 Query 119279 CTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTG 119338 | | || | | || |||||||| | ||| ||||| || || ||| ||||| Sbjct 29958 C--AGTGCCACGGATGCAGTGGATGTTGAGACCGATACCACCGGCGGTCTTGGAGATCAT 29901 Query 119339 CGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAG 119398 ||||| | |||| || ||||||| || ||||| ||||| |||| | | || ||| Sbjct 29900 GGCGCAGGTCTTGAGCGTGTCGTAGATGCCGTCGATGGAGTCGTCCTTCATGGTGACGAG 29841 Query 119399 GAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTG 119458 ||| || ||| | || || || ||||| ||||||||||| || || | ||||| Sbjct 29840 GAAACACGACGAGAGCTGCGGGTGAGGGGTACCGGCGTTGAAGAGGGTGGGCGAGGCGTG 29781 Query 119459 GATGAACATAC-CTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCC 119517 | | || ||| ||| ||||| || ||||||||| | | || || ||||| | | Sbjct 29780 GGT-AAAGTACTTTTGCGACATGAGGTTGTAGGTCTCGATGGCGCTGGCGATGTCCTGAC 29722 Query 119518 CGTGAATACCGATCGAGACCCGCATAAACATGTATTgggg 119557 |||| ||||||| | ||| ||||| | ||||| ||||| Sbjct 29721 CGTGGATACCGACGGCGACACGCATGAGCATGTGCTGGGG 29682 >seq75 Length=98333 Score = 143 bits (158), Expect = 3e-29 Identities = 304/446 (68%), Gaps = 6/446 (1%) Strand=Plus/Minus Query 129735 CAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAA 129794 ||||| |||||||||||||| ||||| || | | || || || ||||| || |||| Sbjct 64805 CAACCTTTTTCTCGAAGAAGTTGGTCTTTCCTTGAAGACTTATGTTTTCCATGAAGTCAA 64746 Query 129795 ATGGGTTCTTTGAGTTCCAAATTG-CTGGCACTCCAATCTGTTTGAGGAGACGATCCGAG 129853 | ||||| | | | | ||| | | || ||||| | || ||||| || | Sbjct 64745 AGGGGTTGCTGGCGC-CGTAATGGACCGGGTTTCCAAGCGAAACAAGCAGACGGTCAGCC 64687 Query 129854 ACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-GTTACATGGGAG 129912 |||||||| ||||||| ||||| | |||||||| || || | | ||| ||||| Sbjct 64686 ACGTACTCTATGTACTGGCACATCAATTTCGAGTTCATGCCAATCAAAGATACG-GGGAG 64628 Query 129913 CGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGAATGGT 129972 ||||| || ||| | ||||| || ||||| || || | ||| | | | ||| Sbjct 64627 AGCGTCGGTGAGGAAAGCTTTCTCGATTTCCACGGCCTCGGTGATGATTTTGAGCACGGT 64568 Query 129973 CTCCGTGCCAGGTCTATTGCGCAAAGTCT-TGAAGAGTTCCACGGCAAACTCCTGGTGGA 130031 |||| | | || || | | || ||||||| |||||| || ||| | Sbjct 64567 GTCCGGGTGCGCTCGCTT-CTTGAGGTGGCTGAAGAGGAGGCAGGCAAAGTCGGTGTGCA 64509 Query 130032 GACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCT 130091 |||| |||||||| |||||||| || || ||||| ||||| ||||||||||| |||| Sbjct 64508 GACCTTCGTCACGCGAGATGAGCTCGTTGGAGAAAGTGAGACCGGGCATGAGACCACGCT 64449 Query 130092 TCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGA 130151 |||| | |||||| || | || || || ||||||||||| ||||| ||| |||| Sbjct 64448 TCTTGAGCCAGAAGATGGAGGCGAAGGAACCGGAGAAGAAGATACCCTCGACAGCGGCGA 64389 Query 130152 ACGCAAAGAGACGCTCAGCAAAGGAG 130177 | |||| ||||||||| || || ||| Sbjct 64388 AGGCAACGAGACGCTCGGCGAAAGAG 64363 >seq2 Length=407147 Score = 125 bits (138), Expect = 9e-24 Identities = 228/332 (69%), Gaps = 10/332 (3%) Strand=Plus/Plus Query 179733 CTTGAGGAGCGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGA 179792 |||||| ||||| || |||||| || || | |||| |||||||||||| ||||| || Sbjct 60865 CTTGAGCAGCGACGGGTAGAAGTGGTCGAGGAAGTTGATGATGAGACCCTTGATGTGCGA 60924 Query 179793 ACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAGCTCGGAAACATC 179852 ||| |||| |||| ||| ||||| ||||| | | || || || || | || || Sbjct 60925 ACCGTCGTGATCCTGATCGGTCATGATCATGATACTGCCGTATCGCAGACTGTTCACGTC 60984 Query 179853 TTGATAATCCTTACCTTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGTT 179912 |||| | ||| || || || ||||||||||||| ||||| | |||| || ||| Sbjct 60985 GAGATACTGCTTGCCGTGCTGGAGACCCAAGATCTCCTTGATGGCTTTGATTTCGGCGTT 61044 Query 179913 -----TGATGTGAGTTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGA 179967 |||| || || | || || || || ||||| || ||| |||||||| Sbjct 61045 CTTCATGATCTG-GTCGTGC----GAGGCTTCACGGACGTTCAAGAGCTTACCACGGAGC 61099 Query 179968 GGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTC 180027 ||||| ||||| |||| || | || ||| | | ||| || || ||||| | ||| Sbjct 61100 GGGAAGACACCATAGTTGTCTCTTCCGACCTCGACAATACCGGCGACAGCGAGCGACTTG 61159 Query 180028 GCGGAATCACCCTCCGTCACGATGAGCGTACA 180059 ||||| ||||| || || | |||||| || || Sbjct 61160 GCGGAGTCACCTTCGGTGAGGATGAGTGTGCA 61191 >seq78 Length=94480 Score = 84.2 bits (92), Expect = 3e-11 Identities = 165/240 (69%), Gaps = 12/240 (5%) Strand=Plus/Plus Query 14233 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGT---TGATTTTCACGGGC 14289 |||||| | || ||||||||||||||||| | ||| || || || || | ||| Sbjct 26115 CTTACCAATAGCATCAATTTCATCGATGAAGATGATGCAAGGAGCGTGCTTCTT---GGC 26171 Query 14290 AACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 14349 | |||| || |||||||||| | | ||||||||| ||||||||||| || || | Sbjct 26172 ATTGGCAAACATGTCTCGCACTCGGCTAGGACCGACACCGACAAACATCTCTACGAACTC 26231 Query 14350 GGCGGCGGA-ACATTGG--ATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAG 14406 || |||| || || | |||||| || | || ||||| || |||| || || Sbjct 26232 GGAACCGGAGAC---GGACAAGAAGGGCACTTGAGCCTCACCAGCAGTGGCCTTTGCAAG 26288 Query 14407 GAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 14466 || ||||| || || || || || | ||| | |||||||||||| ||| | || || Sbjct 26289 CAGCGTCTTGCCGGTACCGGGGGGACCAGAGAGGATGGCACCACGTGGAATCTTTGCGCC 26348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618316058458720